Basic Information
Locus ID:
Ag10G02770
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 234981846 | 234983831 | + | Ag10G02770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 56,132.63 Da | 54.14 | 76.43 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 117 | 160 | 7.52097E-20 | - |
| Pfam | PF13639 | Ring finger domain | 117 | 160 | 1.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 99 | 172 | 1.82E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 166 | 4.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 118 | 159 | 6.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 118 | 160 | 12.282736 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 417 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30400.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017255244.1 | PREDICTED: RING-H2 finger protein ATL13-like [Daucus carota subsp. sativus] | 0 |
| Q940Q4 | RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2 | 0 | |
| TrEMBL | A0A161ZYY7 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020105 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.962072 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.446702 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.482057 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.764601 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.909217 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.323007 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.206187 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.675376 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.751205 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.577374 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.755573 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.511238 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.561578 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.445745 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 32.30962 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 25.714684 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 22.836933 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.672583 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.247963 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.585762 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.755251 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.98895 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.881531 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.019358 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.487805 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.472779 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.349072 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.395583 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.947141 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.964586 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.742558 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.78027 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.55329 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.407358 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.969867 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.08755 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.1079 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.503403 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 15.739051 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.755312 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.887759 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.491819 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.437838 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.696663 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.082475 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.492722 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.101707 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.357286 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.429079 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.014605 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15644, jg4044 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9189 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014844, Ah016493 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192210 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24824, Sbi_jg8692 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19916 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022228 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42509, Sgl47239 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010420, gene:ENSEOMG00000033253 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0017690, CQ.Regalona.r1.8BG0018760 |
| Apiaceae | Apium graveolens | 3 | Ag10G02770, Ag2G02725, Ag3G02248 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G004370, COCNU_01G008910, COCNU_11G012480 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103700086, gene-LOC103701732, gene-LOC103710486 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2554.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G32074, Ftri15G10935 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G18650.1, AT4G30400.1, AT5G57750.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10014578m.g.v1.0, Thhalv10022703m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g32140.v2.2, Sp6g19430.v2.2, Sp7g28280.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g084680.2N, BniB03g067490.2N, BniB04g025480.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1174 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1281 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g07430, gene.Cymno05g08770 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g29750 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.406 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00000663, Pov_00000666, Pov_00015628 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26543 |
| Poaceae | Echinochloa crus-galli | 9 | AH07.3746, AH08.1713, BH03.1722, BH06.642, BH07.3570 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0148580, gene-QOZ80_2BG0203960 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0384300.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_026088, gene-QYE76_026287, gene-QYE76_028134 ... |
| Poaceae | Oryza coarctata | 6 | Oco03G023910, Oco04G024460, Oco11G004110, Oco12G004110 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g54830.1, LOC_Os06g08820.1, LOC_Os08g34550.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G302800, gene-BS78_07G152000 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G000640, Chr09G017960, Chr11G021250, Chr15G001880 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G1053500, Tel4E01G342300, Tel6E01G626000 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC4AG015560, gene_TRIDC4BG033370 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS4A02G112500.1.cds1, TraesCS4B02G191600.1.cds1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb177000_P001, Zm00001eb192670_P001 ... |
| Poaceae | Zoysia japonica | 6 | nbis-gene-17083, nbis-gene-34911, nbis-gene-39951 ... |
| Poaceae | Zoysia macrostachya | 6 | Zma_g14599, Zma_g17312, Zma_g23072, Zma_g24142, Zma_g29249 ... |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2655, evm.TU.LG23.880 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g19430 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.210, evm.TU.Scaffold_4_RagTag.2117 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13367, nbisL1-mrna-25380 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1652, nbisL1-mrna-16616 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16638, nbisL1-mrna-4877 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.459, add.evm.TU.utg000033l.46 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014522 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-22520, nbisL1-mrna-23518 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14597, nbisL1-mrna-19403 |
| Salicaceae | Populus euphratica | 2 | populus_peu05517, populus_peu28333 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602870 |
| Solanaceae | Solanum chilense | 1 | SOLCI004327600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023952 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12540_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0697 |
| Zosteraceae | Zostera marina | 2 | Zosma01g40050.v3.1, Zosma01g42880.v3.1 |