Basic Information
Locus ID:
Ag10G02767
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 234871093 | 234873839 | + | Ag10G02767 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 47,853.36 Da | 34.72 | 96.39 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00293 | USP_Like | 8 | 118 | 3.33404E-8 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 140 | 396 | 2.1E-40 | IPR001245 |
| Pfam | PF00582 | Universal stress protein family | 9 | 118 | 3.6E-7 | IPR006016 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 111 | 399 | 1.37E-71 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 7 | 116 | 2.43E-8 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 2 | 116 | 7.5E-8 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 209 | 415 | 1.4E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 117 | 208 | 1.4E-22 | - |
| SMART | SM00220 | serkin_6 | 132 | 387 | 8.6E-21 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 132 | 413 | 33.997231 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 253 | 265 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57670.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017256767.1 | PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Daucus carota subsp. sativus] | 0 |
| Q5XF57 | Probable receptor-like serine/threonine-protein kinase At5g57670 OS=Arabidopsis thaliana OX=3702 GN=At5g57670 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164X0E0 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020111 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.494108 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.109589 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.069177 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.990132 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 3.314971 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 2.965502 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.501264 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.393681 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.451573 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.275464 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.424523 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.719272 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.389503 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.270288 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.76666 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.682031 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.506894 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.824986 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.790127 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.761286 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.652068 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.001188 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.317028 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.211901 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.16272 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.516653 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.555585 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.169189 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.512424 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.258666 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.287971 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.035961 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.430255 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.087394 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.061801 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.485772 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.037521 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.111844 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.664145 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.144743 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.622103 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15708, jg33130, jg4103 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10808, gene_9174 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014768, Ah014821 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g198480, BVRB_8g198870 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg25176, Sbi_jg40800, Sbi_jg50776, Sbi_jg9015 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19570, Seu_jg2328 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007589, GOSA_00007632 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl42447, Sgl42485, Sgl47176, Sgl47215 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000009726, gene:ENSEOMG00000010370 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0018360, CQ.Regalona.r1.8BG0024040 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30263290, pistato.v30263920 |
| Apiaceae | Apium graveolens | 2 | Ag10G02767, Ag2G02695 |
| Arecaceae | Cocos nucifera | 4 | COCNU_01G003630, COCNU_01G008770, COCNU_11G009260 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103697732, gene-LOC103701701, gene-LOC103707134 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2459.V1.1, AsparagusV1_05.3462.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G09643, Ftri15G15518 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G18890.1, AT5G57670.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013078m.g.v1.0, Thhalv10022722m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g32360.v2.2, Sp6g19360.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g037050.2N, BniB03g067860.2N, BniB04g025350.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1091, Ceq03G1190 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1177, Cgl03G1297 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g08010 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g18670 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG07.443, evm.TU.LG07.520 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000472, Pov_00000551 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17089, Lb5G26577 |
| Poaceae | Echinochloa crus-galli | 9 | AH06.2809, AH08.881, AH09.2544, BH06.2602, BH08.891 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_4AG0301150, gene-QOZ80_4BG0331920 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0203070.1, HORVU.MOREX.r3.7HG0729620.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_032343, gene-QYE76_035614, gene-QYE76_046855 |
| Poaceae | Oryza coarctata | 5 | Oco07G017830, Oco08G017220, Oco11G015860, Oco15G005010 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os04g56060.1, LOC_Os06g47820.1, LOC_Os08g15060.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_06G264000, gene-BS78_07G099600 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0306710, Pt_Chr0402829 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr10G021090, Chr11G001530, Chr16G003380, Chr17G003110 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G856300, Tel7E01G723300, Tel7E01G862200 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG071060, gene_TRIDC2BG076820 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2A02G504700.1, TraesCS2B02G532900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb068000_P002, Zm00001eb226210_P003 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-23059, nbis-gene-48352, nbis-gene-6058 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12911, Zma_g22120, Zma_g23848, Zma_g33305 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.2712, evm.TU.LG13.1607, evm.TU.LG16.1426 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g14840 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.272, evm.TU.Scaffold_4_RagTag.2050 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-13293, nbisL1-mrna-25396, nbisL1-mrna-25450 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-1965, nbisL1-mrna-7837, nbisL1-mrna-9399 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-16689, nbisL1-mrna-4815, nbisL1-mrna-4866 ... |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.1196, evm.TU.utg000008l.1227 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000721, Maker00001285, Maker00014785 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-14267, nbisL1-mrna-14300, nbisL1-mrna-16590 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-14657, nbisL1-mrna-19413, nbisL1-mrna-19464 |
| Salicaceae | Populus euphratica | 7 | populus_peu05427, populus_peu05497, populus_peu12041 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132602829, gene-LOC132603416 |
| Solanaceae | Solanum chilense | 1 | SOLCI006907200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107024048, gene-LOC107025530 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_9117, gene_9155 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0836, TC10G0930 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00310.v3.1 |