Basic Information
Locus ID:
Ag10G02761
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 234788983 | 234798224 | - | Ag10G02761 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 130,065.09 Da | 44.47 | 73.00 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 47 | 143 | 2.99402E-48 | - |
| CDD | cd13999 | STKc_MAP3K-like | 901 | 1158 | 1.51368E-104 | - |
| Pfam | PF00564 | PB1 domain | 59 | 143 | 2.4E-18 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 896 | 1158 | 6.4E-62 | IPR001245 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 60 | 145 | 2.65E-23 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 883 | 1157 | 3.19E-76 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 982 | 1167 | 2.4E-55 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 62 | 144 | 4.2E-12 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 881 | 981 | 2.5E-23 | - |
| SMART | SM00666 | PB1_new | 58 | 143 | 3.6E-33 | IPR000270 |
| SMART | SM00220 | serkin_6 | 895 | 1164 | 8.5E-57 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 895 | 1165 | 40.442333 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1020 | 1032 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 901 | 922 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 977 | 990 | 1.6E-16 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1085 | 1107 | 1.6E-16 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1129 | 1151 | 1.6E-16 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1014 | 1032 | 1.6E-16 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 846 | 872 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57610.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_017257831.1 | PREDICTED: uncharacterized protein LOC108227279 [Daucus carota subsp. sativus] | 0 |
| A0A2R6XIK6 | RAF-like serine/threonine-protein kinase PRAF OS=Marchantia polymorpha OX=3197 GN=PRAF PE=1 SV=1 | 0 | |
| TrEMBL | A0A161YHC4 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020116 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 35.37154 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 36.162373 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 46.444168 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 46.640194 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 50.239265 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 49.288105 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 49.900112 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 41.32806 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 35.112 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 35.756474 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 38.329021 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 37.855762 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 40.472824 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 33.748287 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.633347 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.747068 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 14.391924 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 27.078501 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.447266 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 22.702103 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 28.892969 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 16.542788 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.849077 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.156353 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 17.120872 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 29.600573 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.210649 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 22.244728 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 26.333261 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.274081 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.62959 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.381502 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 18.064375 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.793487 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.086056 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.142787 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.963337 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.711135 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.491722 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.842354 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.77145 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.800941 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.45514 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 37.932713 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 33.920147 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.331341 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 41.162334 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.793178 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.262355 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.679033 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31480 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9167 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014802 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g198740 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25206, Sbi_jg9047 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19540 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007606, GOSA_00007607 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42475, Sgl47204 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010267, gene:ENSEOMG00000032832 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0018030, CQ.Regalona.r1.8BG0024310 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30263800 |
| Apiaceae | Apium graveolens | 1 | Ag10G02761 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G012680 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720427 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2518.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G20249, Ftri7G10441 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G57610.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012514m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g19300.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g013730.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1206 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1310 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g08890 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g14820 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.427 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00017273 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G26582, Lb5G26583 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3718, BH07.3540, CH07.3612 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0148350, gene-QOZ80_2BG0203720 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0622060.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_018322, gene-QYE76_026136 |
| Poaceae | Oryza coarctata | 2 | Oco03G023710, Oco04G024270 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g54510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G300000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202978 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr09G018140, Chr0G032570, Chr13G002340, Chr15G002050 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G615000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG051980, gene_TRIDC6BG060580 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G344800.1, TraesCS6B02G377500.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb192780_P001, Zm00001eb257270_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39973 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14581, Zma_g17299 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2692, evm.TU.LG02.2694, evm.TU.LG23.905 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g19670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2087 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25411 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8266 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4853 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1216 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000089 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14288 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19430 |
| Salicaceae | Populus euphratica | 4 | populus_peu05480, populus_peu12086, populus_peu12100 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602814 |
| Solanaceae | Solanum chilense | 1 | SOLCI000388000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026070 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9168 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0880, TC12G0525 |
| Zosteraceae | Zostera marina | 2 | Zosma01g40090.v3.1, Zosma04g03570.v3.1 |