halophFGD

Basic Information

Locus ID: Ag10G02709

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: WD repeat domain phosphoinositide-interacting protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	233293601	233298071	-	Ag10G02709

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.48	45,493.39 Da	46.22	81.80	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	41	289	7.99E-27	IPR036322
Gene3D	G3DSA:2.130.10.10	-	99	328	1.1E-15	IPR015943
SMART	SM00320	WD40_4	247	288	2.1	IPR001680
SMART	SM00320	WD40_4	204	244	0.4	IPR001680
SMART	SM00320	WD40_4	122	157	430.0	IPR001680

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G56440.1	homolog of yeast autophagy 18 (ATG18) D.
RefSeq	XP_017214906.1	PREDICTED: autophagy-related protein 18d-like [Daucus carota subsp. sativus]
Swiss-Prot	Q0WPK3	Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1
TrEMBL	A0A161WV75	Autophagy-related protein 18c OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020158 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	20.082733	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	13.782071	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	18.500057	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	18.039885	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	18.228077	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	14.46944	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	17.500128	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	17.503042	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	17.71488	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	17.834326	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	16.82642	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	15.16083	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	18.427471	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	14.990335	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	26.943514	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	24.806387	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	19.736614	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	23.500456	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	21.446869	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	25.587038	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	26.310135	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	24.557482	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	27.197149	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	25.709583	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	23.849344	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	18.317585	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	20.594961	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	22.218216	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	19.163673	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	10.636539		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	10.892314		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	12.52284		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	18.418196		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	15.477055		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	17.760237		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	15.322124		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	10.572371		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	13.115275		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	10.331842	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	12.973958	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	12.72106	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	39.278107	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	44.290447	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	33.382217	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	38.319653	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	27.521584	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	38.738152	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	17.474157	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	14.883289	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	13.153883	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10095, jg34063, jg35211, jg8871
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10418, gene_24398, gene_6321
Amaranthaceae	Atriplex hortensis	3	Ah005758, Ah029935, Ah032174
Amaranthaceae	Beta vulgaris	2	BVRB_2g038550, BVRB_7g164090
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg1411, Sbi_jg17114, Sbi_jg30094, Sbi_jg35161 ... Sbi_jg43543, Sbi_jg61660
Amaranthaceae	Salicornia europaea	3	Seu_jg18359, Seu_jg3326, Seu_jg379
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003508, GOSA_00004134
Amaranthaceae	Suaeda glauca	7	Sgl24510, Sgl24523, Sgl29690, Sgl66126, Sgl70436, Sgl73754 ... Sgl77260
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000006243, gene:ENSEOMG00000011629 ... gene:ENSEOMG00000015551, gene:ENSEOMG00000020895, gene:ENSEOMG00000029774, gene:ENSEOMG00000034296, gene:ENSEOMG00000039340, gene:ENSEOMG00000049890
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2AG0005350, CQ.Regalona.r1.2BG0004460 ... CQ.Regalona.r1.4AG0008270, CQ.Regalona.r1.4BG0008410, CQ.Regalona.r1.7AG0013820, CQ.Regalona.r1.7BG0015720
Anacardiaceae	Pistacia vera	2	pistato.v30009560, pistato.v30083820
Apiaceae	Apium graveolens	4	Ag10G01835, Ag10G02709, Ag4G01795, Ag7G01603
Arecaceae	Cocos nucifera	5	COCNU_04G004930, COCNU_04G012530, COCNU_16G003310 ... COCNU_16G005530, scaffold001400G000050
Arecaceae	Phoenix dactylifera	4	gene-LOC103707285, gene-LOC103715269, gene-LOC103716696 ... gene-LOC120110184
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.3016.V1.1, AsparagusV1_05.585.V1.1 ... AsparagusV1_05.923.V1.1, AsparagusV1_07.746.V1.1, AsparagusV1_Unassigned.145.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G26838, Ftri3G18597, Ftri8G10558
Brassicaceae	Arabidopsis thaliana	4	AT2G40810.1, AT2G47720.1, AT3G56440.1, AT3G62770.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10005977m.g.v1.0, Thhalv10006031m.g.v1.0 ... Thhalv10016737m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g23130.v2.2, Sp5g00750.v2.2, Sp5g06070.v2.2
Brassicaceae	Brassica nigra	4	BniB01g004580.2N, BniB06g052230.2N, BniB06g061440.2N ... BniB08g071050.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0008, Ceq06G0926, Ceq06G0927
Casuarinaceae	Casuarina glauca	2	Cgl02G0012, Cgl06G0954
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g00960, gene.Cymno03g13440, gene.Cymno18g00910
Dunaliellaceae	Dunaliella salina	1	Dusal.0227s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g08740, gene.Thate05g01250, gene.Thate08g11430
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1863, nbisL1-mrna-6269
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1649, evm.TU.LG04.314
Plantaginaceae	Plantago ovata	4	Pov_00008267, Pov_00024850, Pov_00024851, Pov_00036311
Plumbaginaceae	Limonium bicolor	6	Lb1G02500, Lb1G07582, Lb1G07625, Lb2G12921, Lb4G21554 ... Lb4G21561
Poaceae	Echinochloa crus-galli	12	AH02.4425, AH02.517, AH03.4014, AH05.1109, BH02.4465 ... BH02.535, BH03.311, BH05.1378, CH02.4513, CH02.596, CH05.1309, CH07.165
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0011110, gene-QOZ80_1AG0045660 ... gene-QOZ80_1BG0059710, gene-QOZ80_1BG0095650, gene-QOZ80_5AG0403330, gene-QOZ80_5BG0451710, gene-QOZ80_7AG0581220, gene-QOZ80_7BG0612320
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0026100.1, HORVU.MOREX.r3.3HG0234270.1 ... HORVU.MOREX.r3.3HG0313730.1, HORVU.MOREX.r3.4HG0380910.1
Poaceae	Lolium multiflorum	6	gene-QYE76_009815, gene-QYE76_018187, gene-QYE76_038861 ... gene-QYE76_038862, gene-QYE76_049936, gene-QYE76_057676
Poaceae	Oryza coarctata	6	Oco01G002680, Oco01G029290, Oco02G002730, Oco02G030490 ... Oco13G015400, Oco14G016230
Poaceae	Oryza sativa	4	LOC_Os01g07400.1, LOC_Os01g70780.1, LOC_Os05g07710.3 ... LOC_Os07g47410.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G051700, gene-BS78_03G394100 ... gene-BS78_09G066300
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0107882, Pt_Chr0207424, Pt_Chr0306736, Pt_Chr0501698 ... Pt_Chr0501743, Pt_Chr0600710
Poaceae	Sporobolus alterniflorus	11	Chr01G011680, Chr02G001700, Chr02G001770, Chr02G019440 ... Chr03G004930, Chr03G023340, Chr05G010410, Chr05G032780, Chr08G000030, Chr08G018660, Chr20G010820
Poaceae	Thinopyrum elongatum	5	Tel1E01G209700, Tel2E01G245900, Tel3E01G166700 ... Tel3E01G717400, Tel4E01G322300
Poaceae	Triticum dicoccoides	8	gene_TRIDC1AG014430, gene_TRIDC1BG019650 ... gene_TRIDC3AG011460, gene_TRIDC3AG064120, gene_TRIDC3BG015410, gene_TRIDC3BG072040, gene_TRIDC4AG017410, gene_TRIDC4BG034370
Poaceae	Triticum aestivum	9	TraesCS1A02G112700.1, TraesCS1B02G132900.1 ... TraesCS1D02G114300.1, TraesCS3A02G095300.1, TraesCS3A02G453200.1, TraesCS3B02G110900.1, TraesCS3B02G490900.1, TraesCS3D02G095500.1, TraesCS4B02G179000.2
Poaceae	Zea mays	4	Zm00001eb123160_P001, Zm00001eb142210_P001 ... Zm00001eb336470_P001, Zm00001eb363500_P001
Poaceae	Zoysia japonica	7	nbis-gene-10891, nbis-gene-13104, nbis-gene-136 ... nbis-gene-23530, nbis-gene-28234, nbis-gene-58212, nbis-gene-6868
Poaceae	Zoysia macrostachya	6	Zma_g10020, Zma_g11877, Zma_g26511, Zma_g7046, Zma_g7667 ... Zma_g9332
Portulacaceae	Portulaca oleracea	5	evm.TU.LG03.813, evm.TU.LG05.447, evm.TU.LG08.672 ... evm.TU.LG12.921, evm.TU.LG22.1277
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g27630, gene.Posoc02g33070, gene.Posoc07g12670
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.129, evm.TU.Scaffold_5_RagTag.885 ... evm.TU.Scaffold_9_RagTag.834
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11460, nbisL1-mrna-8137, nbisL1-mrna-8143
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1712, nbisL1-mrna-1881, nbisL1-mrna-5125
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11511, nbisL1-mrna-18465, nbisL1-mrna-5209
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.574, evm.TU.utg000006l.237 ... evm.TU.utg000012l.94
Rhizophoraceae	Kandelia obovata	3	Maker00009869, Maker00011254, Maker00013028
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10065, nbisL1-mrna-1551, nbisL1-mrna-7865
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-119, nbisL1-mrna-5217, nbisL1-mrna-7504
Salicaceae	Populus euphratica	6	populus_peu13375, populus_peu15707, populus_peu19121 ... populus_peu27230, populus_peu31211, populus_peu37176
Solanaceae	Lycium barbarum	4	gene-LOC132609568, gene-LOC132635574, gene-LOC132638431 ... gene-LOC132645935
Solanaceae	Solanum chilense	3	SOLCI001649000, SOLCI002271800, SOLCI003536000
Solanaceae	Solanum pennellii	3	gene-LOC107008157, gene-LOC107023781, gene-LOC107027240
Tamaricaceae	Reaumuria soongarica	3	STRG.10618_chr07_-, STRG.32329_chr09_-, STRG.8405_chr05_+
Tamaricaceae	Tamarix chinensis	3	TC01G3979, TC02G1357, TC08G0615
Zosteraceae	Zostera marina	2	Zosma01g11850.v3.1, Zosma06g22110.v3.1