Basic Information
Locus ID:
Ag10G02697
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 233179940 | 233184950 | + | Ag10G02697 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 51,750.51 Da | 43.32 | 90.50 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF69322 | Tricorn protease domain 2 | 48 | 438 | 2.62E-36 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 322 | 449 | 8.1E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 132 | 1.5E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 133 | 276 | 3.3E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 209 | 250 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 77 | 119 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 367 | 405 | 5.9 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07590.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017255019.1 | PREDICTED: WD repeat-containing protein WRAP73 [Daucus carota subsp. sativus] | 0 |
| Q9P2S5 | WD repeat-containing protein WRAP73 OS=Homo sapiens OX=9606 GN=WRAP73 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164WYV6 | WD repeat-containing protein WRAP73 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020172 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.724106 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.323765 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.91852 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.611085 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.558702 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.748361 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.429218 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.114265 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 27.116158 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 29.063675 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 29.631136 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.580076 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 21.647581 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 21.530319 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.406089 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.958782 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.815281 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.58105 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.5434 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.802083 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.321317 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 17.171209 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.644696 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.702608 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.502709 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.074785 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 17.488909 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.972186 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 14.626692 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.275814 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.199254 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.678286 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.324733 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.618593 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.326543 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.517903 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.99597 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.556566 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.511815 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.750685 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.266116 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.405313 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.381646 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.883719 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.008078 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.336362 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.888519 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 33.098736 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 25.19478 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.012539 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14135 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14143 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028152 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g175240 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26843, Sbi_jg33728 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8417 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003063 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl04408, Sgl09477, Sgl71762, Sgl73131, Sgl75331, Sgl76678 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007905, gene:ENSEOMG00000035226 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0001670, CQ.Regalona.r1.9BG0004020 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30187970 |
| Apiaceae | Apium graveolens | 1 | Ag10G02697 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G005080 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713581 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3229.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G12420 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07590.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013487m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35280.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1140 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1233 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g09090 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0407s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g01660 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2394 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035304 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23704 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.2897, BH01.3235, CH01.3467, CH05.1168 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0116810, gene-QOZ80_2BG0170530 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0057670.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012698 |
| Poaceae | Oryza coarctata | 2 | Oco19G010340, Oco20G010160 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g41370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G285100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503222, Pt_Chr0503267 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G027710, Chr09G005070, Chr13G019740 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G369000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG032860, gene_TRIDC1BG038240 |
| Poaceae | Triticum aestivum | 2 | TraesCS1A02G217800.1, TraesCS1B02G231200.2 |
| Poaceae | Zea mays | 1 | Zm00001eb325360_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38013 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12919, Zma_g15690 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.889, evm.TU.LG21.543 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1239 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12428, nbisL1-mrna-12540 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18626, nbisL1-mrna-6876 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12808 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.279 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008713 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-584 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8876 |
| Salicaceae | Populus euphratica | 2 | populus_peu03807, populus_peu34647 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631673 |
| Solanaceae | Solanum chilense | 2 | SOLCI005455600, SOLCI006462300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012299 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.7852_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2017 |
| Zosteraceae | Zostera marina | 2 | Zosma03g36130.v3.1, Zosma03g36190.v3.1 |