Basic Information
Locus ID:
Ag10G02693
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 233153997 | 233161803 | + | Ag10G02693 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 90,815.70 Da | 43.64 | 85.04 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 738 | 778 | 1.27022E-20 | - |
| CDD | cd01989 | STK_N | 17 | 169 | 6.94924E-43 | - |
| Pfam | PF04564 | U-box domain | 735 | 803 | 2.5E-16 | IPR003613 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 455 | 707 | 9.1E-40 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 432 | 707 | 1.75E-66 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 19 | 145 | 4.05E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 734 | 802 | 1.41E-23 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 7 | 151 | 3.7E-9 | IPR014729 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 734 | 804 | 1.0E-26 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 418 | 522 | 3.4E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 523 | 729 | 1.9E-48 | - |
| SMART | SM00504 | Ubox_2 | 737 | 799 | 9.1E-27 | IPR003613 |
| SMART | SM00220 | serkin_6 | 450 | 713 | 1.3E-22 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 450 | 713 | 33.092655 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 733 | 804 | 35.013046 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 568 | 580 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 456 | 477 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 196 | - | - |
| Coils | Coil | Coil | 405 | 427 | - | - |
| Coils | Coil | Coil | 337 | 392 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25160.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_017258655.1 | PREDICTED: U-box domain-containing protein 35-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9SW11 | U-box domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=PUB35 PE=2 SV=2 | 0 | |
| TrEMBL | A0A161YH73 | RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020176 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.796753 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.083818 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.97885 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.373436 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.016834 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.763088 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.697659 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.641479 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.699566 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.268838 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.115967 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 12.877254 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.544404 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.997913 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.377301 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.66149 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.185442 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.248956 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.667614 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.220038 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.664409 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.107076 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.706197 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.107025 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.470325 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.6331 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.406828 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.155846 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.861183 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.090594 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.262818 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.044763 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.570507 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.682928 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.704588 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.659119 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.762701 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.185599 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.123739 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 16.140615 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.511095 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 28.104561 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 22.666281 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 14.950226 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.511578 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 20.367727 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.745327 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.416588 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.357926 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.931475 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14128 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_3106, gene_3242 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018189 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g053450, BVRB_9g211010 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg15303, Sbi_jg38442, Sbi_jg38443, Sbi_jg38444 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg15366, Seu_jg15367, Seu_jg15368, Seu_jg26596 |
| Amaranthaceae | Suaeda aralocaspica | 5 | GOSA_00006461, GOSA_00006462, GOSA_00006463, GOSA_00020211 ... |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02210, Sgl07073, Sgl07108, Sgl07364 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012294, gene:ENSEOMG00000029173 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0003540, CQ.Regalona.r1.3AG0009060 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30187550, pistato.v30187590 |
| Apiaceae | Apium graveolens | 2 | Ag10G02693, Ag4G01789 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G005170, COCNU_09G002320 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103717300, gene-LOC103721159 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3268.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G24353, Ftri6G25477 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT4G25160.1, AT5G51270.1, AT5G61550.2, AT5G61560.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10003692m.g.v1.0, Thhalv10005349m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g24750.v2.2, Sp2g24760.v2.2, Sp6g13460.v2.2 ... |
| Brassicaceae | Brassica nigra | 13 | BniB02g028540.2N, BniB02g028560.2N, BniB02g028630.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1163 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1268 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g08330 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0345s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g20690 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2380 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00012348, Pov_00029734, Pov_00040770 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21169 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2901, AH06.181, BH01.3240, BH06.282, CH01.3474 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0116730, gene-QOZ80_2BG0170410 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0416400.1, HORVU.MOREX.r3.6HG0541590.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_008916, gene-QYE76_027777, gene-QYE76_030583 ... |
| Poaceae | Oryza coarctata | 6 | Oco05G000100, Oco06G000140, Oco11G001980, Oco12G001900 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g01160.2, LOC_Os06g04880.1, LOC_Os10g41220.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G285800, gene-BS78_10G030600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101057, Pt_Chr0101166, Pt_Chr0402257 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G027760, Chr09G004970, Chr0G015010, Chr11G023260 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel4E01G608600, Tel6E01G059900, Tel7E01G177600 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC4AG059360, gene_TRIDC4AG059380 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS4A02G382700.4, TraesCS4A02G382900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb312220_P004, Zm00001eb377470_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34673, nbis-gene-40371 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g15688, Zma_g29079, Zma_g31326 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.1433, evm.TU.LG01.805, evm.TU.LG06.1890 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g13490 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1246 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12437, nbisL1-mrna-12548 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18619 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12816 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.286 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008769 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-575 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8884 |
| Salicaceae | Populus euphratica | 1 | populus_peu08177 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631680 |
| Solanaceae | Solanum chilense | 2 | SOLCI006716300, SOLCI007312500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012512, gene-LOC107019988 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4201 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2145 |
| Zosteraceae | Zostera marina | 2 | Zosma01g31080.v3.1, Zosma05g30630.v3.1 |