Basic Information
Locus ID:
Ag10G02692
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 233115462 | 233128638 | - | Ag10G02692 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 109,157.19 Da | 51.43 | 83.98 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13934 | Nuclear pore complex assembly | 331 | 601 | 2.6E-55 | IPR025151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 64 | 108 | 8.0E-6 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 69 | 100 | 8.550227 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 908 | 965 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39810.1 | ubiquitin-protein ligases. A novel protein with a RING finger motif near the amino terminus. Negative regulator of cold responses. Functions as an E3 ligase required for the ubiquitination of ICE1. HOS1 physically interacts with ICE1 and mediates the ubiquitination of ICE1 both in vitro and in vivo. Overexpression represses the expression of CBFs and their downstream genes and confers increased sensitivity to freezing stress. | 0 |
| RefSeq | XP_017257894.1 | PREDICTED: E3 ubiquitin-protein ligase HOS1 [Daucus carota subsp. sativus] | 0 |
| Q84JU6 | E3 ubiquitin-protein ligase HOS1 OS=Arabidopsis thaliana OX=3702 GN=HOS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6Z808 | Putative E3 ubiquitin-protein ligase HOS1-like OS=Davidia involucrata OX=16924 GN=Din_009635 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.077456 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.890441 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.034803 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.017859 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.815186 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.910597 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.058498 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.12451 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.565397 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.000896 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.374815 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.488501 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.64703 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.22271 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.98604 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.743821 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.675984 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.747587 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.399925 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.104602 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.200984 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.684452 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.012584 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.81945 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.588627 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.758306 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.027982 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.450388 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.292435 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.034571 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.479829 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.885418 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.681794 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.111726 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.907372 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.519056 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.370747 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.993068 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.192719 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.461963 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.394682 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 11.426752 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.033504 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 8.95195 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.512602 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.692629 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.476207 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.478713 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.867016 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.796725 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37302 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2001 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004065 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g104710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24203, Sbi_jg8037 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11999 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003196 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73023, Sgl76563 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004249, gene:ENSEOMG00000020119 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0004210, CQ.Regalona.r1.5BG0004560 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30142240 |
| Apiaceae | Apium graveolens | 1 | Ag10G02692 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G017370 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708293, gene-LOC120104089 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2010.V1.1, AsparagusV1_04.2011.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G02417 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G39810.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016197m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g22100.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g005420.2N, BniB06g005020.2N, BniB08g025610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0728 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0828 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g12400 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0374s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g06990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11327 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1166 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004162 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08418, Lb2G08419 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3250, BH01.818, CH01.814 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3AG0217130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0340600.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062103 |
| Poaceae | Oryza coarctata | 2 | Oco05G022970, Oco06G023800 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g52700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G088500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107062, Pt_Chr0107540 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G005840, Chr04G028200, Chr07G027070, Chr12G031520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G110300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG038870, gene_TRIDC4BG010430 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G247200.1, TraesCS4B02G067700.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb047720_P001, Zm00001eb056470_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15005, nbis-gene-16082 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2839, Zma_g524 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.889, evm.TU.LG17.882 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26420 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_16_RagTag.355, evm.TU.Scaffold_16_RagTag.356 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22608 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17800 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20174 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.279 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014274 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3419 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6517 |
| Salicaceae | Populus euphratica | 2 | populus_peu03031, populus_peu33909 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635143 |
| Solanaceae | Solanum chilense | 1 | SOLCI002552800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028592 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14075 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3834 |
| Zosteraceae | Zostera marina | 1 | Zosma02g20310.v3.1 |