Basic Information
Locus ID:
Ag10G02678
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Conserved oligomeric Golgi complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 232932766 | 232943738 | + | Ag10G02678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 90,996.77 Da | 42.72 | 101.11 | -0.16 |
Protein Domain:
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51430.1 | conserved oligomeric Golgi complex component-related / COG complex component-related. Encodes a protein that is homologous to Cog7, a subunit of the conserved oligomeric Golgi (COG) complex, which is required for the normal morphology and function of the Golgi apparatus. It is likely to be involved in transport or retention of Golgi-localized proteins and in maintenance of Golgi morphology. | 0 |
| RefSeq | XP_017258140.1 | PREDICTED: conserved oligomeric Golgi complex subunit 7 [Daucus carota subsp. sativus] | 0 |
| Q9FGN0 | Conserved oligomeric Golgi complex subunit 7 OS=Arabidopsis thaliana OX=3702 GN=COG7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164WYJ2 | Conserved oligomeric Golgi complex subunit 7 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020189 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 21.888977 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.012437 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.603902 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 12.519529 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.832029 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.847231 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.739281 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.72148 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 31.898529 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 33.37674 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 34.469254 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 36.387268 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 32.941509 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 30.266062 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 26.187222 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 30.445408 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 30.072739 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 26.839317 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 20.258659 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 24.564032 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 25.099464 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 28.211794 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 27.164221 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 27.636745 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 23.764023 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 29.67865 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 25.511572 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.649612 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 28.873201 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.794411 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.77668 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.429793 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.220889 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.556679 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.65928 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.273577 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.609166 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.587583 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.923203 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.33575 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.618695 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.673176 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.955415 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 14.552554 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.998445 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.754892 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.142938 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 21.429789 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 20.084381 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.359116 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14110 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24328 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035377 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21490, Sbi_jg22325 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16256 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008841 |
| Amaranthaceae | Suaeda glauca | 27 | Sgl00141, Sgl00549, Sgl05200, Sgl05553, Sgl12990, Sgl14644 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017348, gene:ENSEOMG00000018217 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0020330, CQ.Regalona.r1.2AG0022080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30180960 |
| Apiaceae | Apium graveolens | 1 | Ag10G02678 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G007560, COCNU_08G007570 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712245 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1414.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G05449 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G51430.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012691m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g13590.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g028680.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0180 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0121 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g02200 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0037s00015.v1.0, Dusal.0037s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g03520 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11447 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2332 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040788 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G29165 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2623, BH06.2427, CH06.2712 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0547750, gene-QOZ80_6BG0501400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0736930.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_036170 |
| Poaceae | Oryza coarctata | 1 | Oco12G015110 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g45830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G223100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103212, Pt_Chr0401296 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G031620, Chr05G009480, Chr10G019990, Chr11G002670 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G797200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG065710, gene_TRIDC7BG059350 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G470900.1, TraesCS7B02G372700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb389950_P005 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30972, Zma_g33232 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG25.1186 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g04150 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1271 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12460, nbisL1-mrna-12569 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18598 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12839 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.302 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008928 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-560 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8902 |
| Salicaceae | Populus euphratica | 1 | populus_peu34209 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618895 |
| Solanaceae | Solanum chilense | 1 | SOLCI003172600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020335 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5377 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0206 |
| Zosteraceae | Zostera marina | 1 | Zosma06g03710.v3.1 |