halophFGD

Basic Information

Locus ID: Ag10G02629

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	232027090	232028889	-	Ag10G02629

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.68	25,570.66 Da	27.68	79.46	-0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13637	Ankyrin repeats (many copies)	46	98	1.8E-13	-
Pfam	PF00023	Ankyrin repeat	112	130	0.027	IPR002110
Pfam	PF12796	Ankyrin repeats (3 copies)	176	238	4.4E-10	IPR020683
SUPERFAMILY	SSF48403	Ankyrin repeat	14	238	9.64E-39	IPR036770
Gene3D	G3DSA:1.25.40.20	-	141	239	1.9E-15	IPR036770
Gene3D	G3DSA:1.25.40.20	-	6	134	8.3E-31	IPR036770
SMART	SM00248	ANK_2a	77	106	0.17	IPR002110
SMART	SM00248	ANK_2a	177	206	9.1E-5	IPR002110
SMART	SM00248	ANK_2a	44	73	8.6E-5	IPR002110
SMART	SM00248	ANK_2a	111	142	0.26	IPR002110
ProSiteProfiles	PS50297	Ankyrin repeat region circular profile.	44	75	12.832462	-
ProSiteProfiles	PS50088	Ankyrin repeat profile.	111	132	8.923309	IPR002110
ProSiteProfiles	PS50297	Ankyrin repeat region circular profile.	177	206	10.418106	-
ProSiteProfiles	PS50088	Ankyrin repeat profile.	177	209	11.08682	IPR002110
ProSiteProfiles	PS50297	Ankyrin repeat region circular profile.	111	132	8.905817	-
ProSiteProfiles	PS50088	Ankyrin repeat profile.	44	76	13.94479	IPR002110
PRINTS	PR01415	Ankyrin repeat signature	112	127	3.1E-5	IPR002110
PRINTS	PR01415	Ankyrin repeat signature	193	207	3.1E-5	IPR002110

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K19044 (E3 ubiquitin-protein ligase XBAT32/33 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT5G07270.1	XB3 ortholog 3 in Arabidopsis thaliana.
RefSeq	XP_021648639.1	E3 ubiquitin-protein ligase XBAT33-like [Hevea brasiliensis]
Swiss-Prot	Q4FE45	E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1
TrEMBL	A0A161WUZ1	RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020238 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	3.309077	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	3.029994	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	3.043686	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	3.179282	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	3.305982	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.038707	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.502285	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.078417	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	16.809366	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	16.9732	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	19.619989	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	18.121395	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	13.978877	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	13.854366	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	6.079394	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	7.480888	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	2.858078	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	8.973541	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	6.724728	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	7.630054	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	7.459643	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	7.560739	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	9.03392	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	7.824429	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	6.481565	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	9.517382	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	7.577453	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	10.145552	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	8.771797	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.519023		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.876634		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.163716		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	3.37311		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.153592		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	2.825038		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.13093		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.370125		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.131548		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	8.946201	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	5.119868	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.684475	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	4.748138	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	4.659914	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	9.632185	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	8.463117	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	5.201191	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	9.32628	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	5.652821	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	4.827525	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	3.929115	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg14018, jg15641, jg2320, jg33121, jg33991
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10845, gene_16110
Amaranthaceae	Atriplex hortensis	4	Ah014845, Ah018937, Ah020886, Ah020888
Amaranthaceae	Beta vulgaris	1	BVRB_8g192200
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg15542, Sbi_jg24823, Sbi_jg56365, Sbi_jg8691
Amaranthaceae	Salicornia europaea	2	Seu_jg19917, Seu_jg26804
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00006565, GOSA_00022232
Amaranthaceae	Suaeda glauca	4	Sgl02028, Sgl07181, Sgl42510, Sgl47240
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003949, gene:ENSEOMG00000009536 ... gene:ENSEOMG00000030442, gene:ENSEOMG00000035201, gene:ENSEOMG00000042441, gene:ENSEOMG00000044404
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0002520, CQ.Regalona.r1.3BG0002650 ... CQ.Regalona.r1.5BG0017860, CQ.Regalona.r1.8AG0017670, CQ.Regalona.r1.8BG0018750
Anacardiaceae	Pistacia vera	2	pistato.v30182440, pistato.v30264420
Apiaceae	Apium graveolens	5	Ag10G00070, Ag10G02628, Ag10G02629, Ag10G02776, Ag2G01985
Arecaceae	Cocos nucifera	6	COCNU_01G004360, COCNU_07G006970, COCNU_08G006480 ... COCNU_08G006490, COCNU_10G005190, COCNU_11G009130
Arecaceae	Phoenix dactylifera	6	gene-LOC103699530, gene-LOC103707121, gene-LOC103710468 ... gene-LOC103711156, gene-LOC103714157, gene-LOC103716708
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.2555.V1.1, AsparagusV1_08.401.V1.1 ... AsparagusV1_10.1084.V1.1
Asteraceae	Flaveria trinervia	4	Ftri3G08493, Ftri4G01708, Ftri4G32617, Ftri8G02497
Brassicaceae	Arabidopsis thaliana	2	AT5G07270.1, AT5G57740.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10013287m.g.v1.0, Thhalv10013312m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp6g19420.v2.2, Sp6g35620.v2.2
Brassicaceae	Brassica nigra	4	BniB02g037110.2N, BniB02g053620.2N, BniB05g028470.2N ... BniB05g037360.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2098, Ceq03G1173, Ceq05G0537
Casuarinaceae	Casuarina glauca	3	Cgl02G2171, Cgl03G1280, Cgl05G0569
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g05030, gene.Cymno05g08760, gene.Cymno14g04760
Dunaliellaceae	Dunaliella salina	3	Dusal.0060s00020.v1.0, Dusal.0120s00020.v1.0 ... Dusal.0250s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g12330, gene.Thate04g24770, gene.Thate07g07340
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-11810
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2698, evm.TU.LG07.407
Plantaginaceae	Plantago ovata	3	Pov_00000667, Pov_00015626, Pov_00040925
Plumbaginaceae	Limonium bicolor	1	Lb4G24381
Poaceae	Echinochloa crus-galli	12	AH01.3149, AH06.482, AH07.3747, AH08.906, BH01.3508 ... BH06.165, BH07.1940, BH07.3571, CH06.154, CH07.3636, CH08.1047, CH09.292
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0114220, gene-QOZ80_2AG0148590 ... gene-QOZ80_2BG0168020, gene-QOZ80_2BG0203970, gene-QOZ80_6AG0507080, gene-QOZ80_6BG0459140, gene-QOZ80_8AG0624260, gene-QOZ80_8BG0651980
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0051110.1, HORVU.MOREX.r3.6HG0623070.1 ... HORVU.MOREX.r3.7HG0643200.1, HORVU.MOREX.r3.7HG0658700.1
Poaceae	Lolium multiflorum	6	gene-QYE76_012144, gene-QYE76_016444, gene-QYE76_026086 ... gene-QYE76_026289, gene-QYE76_032299, gene-QYE76_032308
Poaceae	Oryza coarctata	8	Oco03G023930, Oco04G024470, Oco11G001310, Oco12G001220 ... Oco15G005170, Oco16G004890, Oco19G008370, Oco20G008220
Poaceae	Oryza sativa	4	LOC_Os02g54860.1, LOC_Os06g03800.1, LOC_Os08g15840.5 ... LOC_Os10g37730.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G309600, gene-BS78_01G359000 ... gene-BS78_07G100700, gene-BS78_10G021200
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0203812, Pt_Chr0303694, Pt_Chr0401920, Pt_Chr0402814 ... Pt_Chr0503012, Pt_Chr0503018
Poaceae	Sporobolus alterniflorus	14	Chr05G014770, Chr05G017530, Chr06G000630, Chr06G029210 ... Chr09G003030, Chr09G017950, Chr11G024010, Chr13G002140, Chr13G021810, Chr15G001870, Chr15G020400, Chr16G003470, Chr17G003170, Chr29G008820
Poaceae	Thinopyrum elongatum	5	Tel1E01G324900, Tel2E01G982100, Tel6E01G626500 ... Tel7E01G130600, Tel7E01G296500
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG028640, gene_TRIDC1BG032970 ... gene_TRIDC6AG052980, gene_TRIDC6BG061580, gene_TRIDC7AG006520, gene_TRIDC7AG017780, gene_TRIDC7BG007140
Poaceae	Triticum aestivum	12	TraesCS1A02G189100.1, TraesCS1B02G196800.1 ... TraesCS1D02G187300.1, TraesCS4A02G429100.1, TraesCS6A02G352300.1, TraesCS6B02G385200.1, TraesCS6D02G335000.2, TraesCS7A02G060700.1, TraesCS7A02G145900.1, TraesCS7B02G048300.1, TraesCS7D02G055500.1, TraesCS7D02G147400.1
Poaceae	Zea mays	5	Zm00001eb021320_P001, Zm00001eb178040_P001 ... Zm00001eb192640_P001, Zm00001eb269490_P002, Zm00001eb378520_P001
Poaceae	Zoysia japonica	6	nbis-gene-34432, nbis-gene-36123, nbis-gene-44701 ... nbis-gene-51169, nbis-gene-51170, nbis-gene-8460
Poaceae	Zoysia macrostachya	5	Zma_g12784, Zma_g14600, Zma_g15541, Zma_g22715, Zma_g31271
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2654, evm.TU.LG11.1603, evm.TU.LG16.1442 ... evm.TU.LG23.879
Posidoniaceae	Posidonia oceanica	10	gene.Posoc01g19400, gene.Posoc01g36140, gene.Posoc02g03990 ... gene.Posoc02g24810, gene.Posoc03g02670, gene.Posoc06g11590, gene.Posoc06g11610, gene.Posoc06g16450, gene.Posoc07g12900, gene.Posoc09g02980
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.211, evm.TU.Scaffold_4_RagTag.147 ... evm.TU.Scaffold_11_RagTag.1356
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-12655, nbisL1-mrna-13366, nbisL1-mrna-29198
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15068, nbisL1-mrna-16283, nbisL1-mrna-7227
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12926, nbisL1-mrna-16639, nbisL1-mrna-2137
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.89, evm.TU.utg000010l.353 ... evm.TU.utg000033l.142
Rhizophoraceae	Kandelia obovata	4	Maker00000037, Maker00008459, Maker00008595, Maker00014619
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1060, nbisL1-mrna-16627, nbisL1-mrna-2368
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-14598, nbisL1-mrna-20614, nbisL1-mrna-6257
Salicaceae	Populus euphratica	3	populus_peu05515, populus_peu29257, populus_peu30619
Solanaceae	Lycium barbarum	2	gene-LOC132602871, gene-LOC132631864
Solanaceae	Solanum chilense	1	SOLCI006529100
Solanaceae	Solanum pennellii	2	gene-LOC107015481, gene-LOC107026410
Tamaricaceae	Reaumuria soongarica	2	STRG.18817_chr07_-, gene_4140
Tamaricaceae	Tamarix chinensis	3	TC06G1662, TC12G0417, TC12G0418
Zosteraceae	Zostera marina	3	Zosma01g04350.v3.1, Zosma01g35410.v3.1, Zosma03g12500.v3.1