Basic Information
Locus ID:
Ag10G02606
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
ZINC FINGER protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 231586594 | 231594387 | - | Ag10G02606 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 76,018.79 Da | 54.51 | 70.10 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 76 | 98 | 9.223856 | IPR013087 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 78 | 98 | - | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 631 | 683 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 631 | 654 | - | - |
| Coils | Coil | Coil | 263 | 298 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25610.1 | C2H2-like zinc finger protein. | 0 |
| RefSeq | XP_017254459.1 | PREDICTED: uncharacterized protein LOC108224381 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164WWX7 | C2H2-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.705873 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.586609 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.16697 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.280932 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.574595 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.150351 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.330661 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.784262 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.819127 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.090719 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.499667 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.933336 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.469884 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.525163 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.098027 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.255464 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.654112 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.69256 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.94542 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.078115 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.629754 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.338029 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.181004 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.023201 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.415574 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.679456 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.415502 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.519331 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.470454 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.506297 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.994704 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.71592 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.874034 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.31802 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.102543 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.276579 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.765864 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.418445 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.172262 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.440857 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.824422 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.863465 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.658843 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.542913 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 13.018625 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.21831 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 10.234768 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.818704 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.615407 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.128512 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg2285, jg33969 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16141 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018861 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g055090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38403, Sbi_jg6510 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15407 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006499 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01956, Sgl07112 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000443, gene:ENSEOMG00000028832 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0003060, CQ.Regalona.r1.3BG0003320 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30182980 |
| Apiaceae | Apium graveolens | 2 | Ag10G02606, Ag2G02026 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G010450, COCNU_09G007910 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698622, gene-LOC103705525 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2103.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G08008 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G25610.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024755m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g23640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g082020.2N, BniB05g011720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1455 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1548 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g01110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g07070 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11787, nbisL1-mrna-12618 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2747 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010370, Pov_00040982 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G03961, Lb1G03962, Lb1G04004 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.1126, BH03.1289, BH09.419, CH03.1449, CH03.91 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0331730.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020491, gene-QYE76_040056 |
| Poaceae | Oryza coarctata | 1 | Oco18G012220 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g39660.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G134800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0700637 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G008290, Chr21G008470 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G013100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG047340, gene_TRIDC4BG001310 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G310700.1, TraesCS4B02G003500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb095880_P002, Zm00001eb224460_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31801 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32022 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1417, evm.TU.LG11.1643, evm.TU.LG14.699 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g05810 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.1409, evm.TU.Scaffold_4_RagTag.109 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12700, nbisL1-mrna-29232 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7250 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2170 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.68, evm.TU.utg000010l.386 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000070, Maker00009070 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1089, nbisL1-mrna-2346 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20576, nbisL1-mrna-6291 |
| Salicaceae | Populus euphratica | 2 | populus_peu29301, populus_peu30662 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132631933, gene-LOC132639318 |
| Solanaceae | Solanum chilense | 2 | SOLCI002473000, SOLCI004626000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012418 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.6434_chr04_+, gene_10808 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G2368, TC08G1588 |
| Zosteraceae | Zostera marina | 2 | Zosma01g24230.v3.1, Zosma03g26760.v3.1 |