Basic Information
Locus ID:
Ag10G02586
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Glutaminyl-peptide
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 231248843 | 231254357 | + | Ag10G02586 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 38,022.27 Da | 38.01 | 90.06 | -0.27 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25720.1 | glutaminyl cyclase. This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model. | 0 |
| RefSeq | XP_017258185.1 | PREDICTED: glutaminyl-peptide cyclotransferase-like isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q84WV9 | Glutaminyl-peptide cyclotransferase OS=Arabidopsis thaliana OX=3702 GN=QCT PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6Z5J6 | Putative glutaminyl-peptide cyclotransferase OS=Davidia involucrata OX=16924 GN=Din_008861 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.899391 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.613744 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.273272 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.518649 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.41044 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.762977 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.252807 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.662134 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.985293 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.631097 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.089766 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.300264 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.473473 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.093333 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.236114 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 19.926208 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.85375 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 19.404675 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.647625 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 16.521236 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 23.692692 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 16.929565 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.216375 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.12742 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 17.546572 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.671556 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 16.456699 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.326857 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.094736 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.073144 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.399475 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.129515 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.869957 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.61565 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.900365 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.208438 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.686249 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.675717 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.608619 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.901547 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.980886 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 25.189589 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 18.827736 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 17.492481 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.634336 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 24.76618 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 17.469374 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 27.085541 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 28.36248 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 28.92277 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg12311, jg13949, jg2257, jg2259, jg6605 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_3244, gene_7144 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009052, Ah018811 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_3g053360, BVRB_4g090300, BVRB_4g090320 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38454, Sbi_jg6564 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15358 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006457 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01890, Sgl07068 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002704, gene:ENSEOMG00000028900 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2BG0001220, CQ.Regalona.r1.3AG0003610 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30183520, pistato.v30183550 |
| Apiaceae | Apium graveolens | 2 | Ag10G02586, Ag4G02893 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G002410 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712433 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1630.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G16670, Ftri4G29503 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G25720.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025771m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g23750.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g011630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1484 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1575 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g02430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0407s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g03660 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2783 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010476, Pov_00041022 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21083 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.25, BH06.20, CH06.18 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6AG0505600, gene-QOZ80_6AG0505610 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0312400.1, HORVU.MOREX.r3.7HG0638390.1 |
| Poaceae | Oryza coarctata | 2 | Oco11G000200, Oco12G000160 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g01410.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G002000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0404100 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr0G007500, Chr0G007510, Chr0G023410, Chr0G023420 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel3E01G699200, Tel3E01G699400, Tel3E01G699500 ... |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG062640, gene_TRIDC4AG067650 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS3A02G442900.1, TraesCS3D02G435400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb268480_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-51239, nbis-gene-51240 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g31206, Zma_g31207, Zma_g31208 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1436, evm.TU.LG06.1900, evm.TU.LG14.718 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g06870 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.87 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29251 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10283 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2191 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.53 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001036 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2332 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6309 |
| Salicaceae | Populus euphratica | 4 | populus_peu09798, populus_peu09799, populus_peu24665 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132631967, gene-LOC132631969 |
| Solanaceae | Solanum chilense | 1 | SOLCI007306400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012228, gene-LOC107012501 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.18731_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1544 |
| Zosteraceae | Zostera marina | 2 | Zosma02g14670.v3.1, Zosma06g05280.v3.1 |