Basic Information
Locus ID:
Ag10G02580
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein of unknown function (DUF3464)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 231151457 | 231152204 | + | Ag10G02580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.73 | 19,600.38 Da | 38.61 | 82.30 | -0.29 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52780.1 | Protein of unknown function (DUF3464). | 0 |
| RefSeq | XP_017256948.1 | PREDICTED: uncharacterized protein PAM68-like [Daucus carota subsp. sativus] | 0 |
| Q9LTD9 | Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7BLW3 | Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_038252 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.975582 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.339343 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.036419 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.234686 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.819635 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.394401 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.691737 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.744338 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.905775 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.024282 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.852879 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 19.614553 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.874186 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.121607 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.471757 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.84256 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 24.888294 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 33.788094 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 48.276382 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 24.339752 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 27.231396 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.734035 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.024034 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.277721 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.850351 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 39.182934 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 33.822216 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 54.696384 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 32.995842 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 29.710316 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 37.418137 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 30.492645 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 27.065056 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 30.670435 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 29.233418 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 56.589645 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 32.841969 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 37.196327 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 81.880089 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 88.171127 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 111.575974 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.983833 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.214178 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 20.799515 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 29.857412 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.927011 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 18.980755 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 30.4632 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 21.970379 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 27.230869 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg13940, jg13944, jg23618 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_3250, gene_9239 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035523 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g027170, BVRB_3g053260 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21810, Sbi_jg22004, Sbi_jg38098, Sbi_jg6227 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15623, Seu_jg15937 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020334 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01516, Sgl06684, Sgl63232, Sgl63368, Sgl67844 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000000155, gene:ENSEOMG00000017711 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0018960, CQ.Regalona.r1.2BG0020610 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30183620, pistato.v30245620 |
| Apiaceae | Apium graveolens | 1 | Ag10G02580 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G008000, COCNU_10G009840 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103716320, gene-LOC103718492, gene-LOC120106038 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2533.V1.1, AsparagusV1_10.60.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G05711, Ftri18G27078, Ftri3G24450 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G19100.1, AT5G52780.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014707m.g.v1.0, Thhalv10026226m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g14920.v2.2, Sp7g17800.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g032390.2N, BniB07g023990.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0092, Ceq09G1492 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0068 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g07590, gene.Cymno18g05060 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g06720 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.943 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010591, Pov_00028544 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G14235, Lb4G22286 |
| Poaceae | Echinochloa crus-galli | 8 | AH01.3102, AH01.4873, AH07.3651, BH01.4801, BH07.3461 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0114790, gene-QOZ80_2AG0147640 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_012266, gene-QYE76_070531 |
| Poaceae | Oryza coarctata | 3 | Oco11G008250, Oco12G008280, Oco19G008760 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g53350.1, LOC_Os06g21530.1, LOC_Os10g38910.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G304100, gene-BS78_01G469800 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G000970, Chr06G028940, Chr12G003000, Chr13G021430 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G330900, Tel4E01G471800, Tel6E01G571800 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC4AG003100, gene_TRIDC4BG048530 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G185200.1.cds1, TraesCS1B02G193100.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb021830_P001, Zm00001eb256490_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-36164, nbis-gene-4395, nbis-gene-47085 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12802, Zma_g15577, Zma_g17254, Zma_g4354 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2530, evm.TU.LG06.464 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g01850 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_16_RagTag.671, evm.TU.Scaffold_4_RagTag.83 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24831, nbisL1-mrna-29259 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19076, nbisL1-mrna-2196 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.14, evm.TU.utg000022l.171 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000151, Maker00016102 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17635, nbisL1-mrna-179 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10433, nbisL1-mrna-6314 |
| Salicaceae | Populus euphratica | 2 | populus_peu03285, populus_peu09810 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604246, gene-LOC132634045 |
| Solanaceae | Solanum chilense | 2 | SOLCI000319900, SOLCI001952600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005463, gene-LOC107013696 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2255 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G0228, TC06G2325 |
| Zosteraceae | Zostera marina | 2 | Zosma04g26110.v3.1, Zosma06g02170.v3.1 |