Basic Information
Locus ID:
Ag10G02561
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 230752231 | 230756899 | + | Ag10G02561 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 34,914.00 Da | 51.74 | 85.49 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 120 | 160 | 1.6E-11 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 118 | 210 | 1.31E-16 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 106 | 160 | 5.3E-15 | - |
| SMART | SM00256 | fbox_2 | 122 | 162 | 1.2E-8 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 116 | 162 | 11.431561 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52880.1 | F-box family protein. | 0 |
| RefSeq | XP_017255494.1 | PREDICTED: F-box protein At5g52880 [Daucus carota subsp. sativus] | 0 |
| Q9FLX3 | F-box protein At5g52880 OS=Arabidopsis thaliana OX=3702 GN=At5g52880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164WW59 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020289 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.367772 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.199194 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.644126 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.591573 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.924809 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.155934 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.447917 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.685372 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.050937 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.782168 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.534907 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.565142 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.957364 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.96582 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.134549 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.712173 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 14.445146 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.846287 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.078086 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.195311 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.670698 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.692961 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.369999 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.904659 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.116085 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.107513 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.336555 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.618645 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.86623 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.822294 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.568401 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.180471 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 17.761745 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.449825 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 16.500547 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.677902 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.212057 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.334736 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.995225 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.875312 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.052553 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 11.801102 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.663025 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 17.287399 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.573318 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.667103 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.452194 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.254686 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.252476 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 15.901164 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2236 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3260 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah007109, Ah018764 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15298, Sbi_jg56114 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26590 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019970 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01486, Sgl06650 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000596, gene:ENSEOMG00000028389 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.1AG0015020, CQ.Regalona.r1.3AG0003920 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30202780 |
| Apiaceae | Apium graveolens | 1 | Ag10G02561 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G003320 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722236 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2514.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G23442 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G52880.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014697m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g15040.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g030700.2N, BniB02g030840.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1513 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1612 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02100 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g15530 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2812 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00008652, Pov_00012705, Pov_00012727, Pov_00041044 ... |
| Poaceae | Echinochloa crus-galli | 2 | BH05.1811, CH04.1063 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0365870 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0082780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_016055 |
| Poaceae | Oryza coarctata | 2 | Oco09G014740, Oco10G014700 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g11780.1, LOC_Os05g45040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G208900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504001, Pt_Chr0504090 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G016680, Chr12G020170 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G550600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG051040, gene_TRIDC1BG058070 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G346700.1, TraesCS1B02G360600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb293490_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13853 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27259 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1923 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g08090 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1451 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12743 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20547 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22459 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.412 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008598 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20537 |
| Salicaceae | Populus euphratica | 1 | populus_peu29594 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631988 |
| Solanaceae | Solanum chilense | 1 | SOLCI002240300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012580 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.6302_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2293 |
| Zosteraceae | Zostera marina | 1 | Zosma01g09430.v3.1 |