Basic Information
Locus ID:
Ag10G02554
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Timeless protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 230678040 | 230688875 | + | Ag10G02554 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 138,208.81 Da | 38.47 | 82.99 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04821 | Timeless protein | 25 | 278 | 1.6E-50 | IPR006906 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1038 | 1058 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 951 | 969 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 566 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 938 | 969 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 653 | - | - |
| Coils | Coil | Coil | 238 | 258 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52910.2 | - | 0 |
| RefSeq | XP_017215066.1 | PREDICTED: protein timeless homolog isoform X2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A161ZW37 | TIMELESS domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020293 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.51625 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.838838 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.806907 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.896123 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.085356 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.296419 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.362892 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.899141 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.967499 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.878048 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.006091 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.493607 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.435657 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.075009 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.689431 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.980732 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.8033 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.295716 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.502868 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.738613 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.611232 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.683882 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.958645 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.321945 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.343309 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.701971 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.991633 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.047624 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.369321 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.146197 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.048941 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.442716 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.189252 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.107953 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.111195 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.318533 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.225403 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.826888 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.383277 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.976521 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2229 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3263 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018756 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052860 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15175, Sbi_jg56009 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26486 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019977 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01477, Sgl06642 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000003818, gene:ENSEOMG00000029528 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0004000, CQ.Regalona.r1.3BG0004140 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30089960, pistato.v30184530, pistato.v30184560 ... |
| Apiaceae | Apium graveolens | 1 | Ag10G02554 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G003470 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716005 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2854.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G10774 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G52910.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012488m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g15090.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g031030.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1525 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1624 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g01940 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0321s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g15400 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11758 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2822 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010478 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb7G33602, Lb7G33603 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1342, BH05.1513, CH05.1713 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0362620, gene-QOZ80_5BG0410790 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0090300.1 |
| Poaceae | Oryza coarctata | 2 | Oco09G004540, Oco10G004200 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g11980.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G240900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502954, Pt_Chr0505616 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr18G016640, Chr22G000890, Chr22G000900 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G677400, Tel5E01G665300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG060320, gene_TRIDC1BG069060 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G409600.1, TraesCS1B02G439600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb296310_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13622 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27407 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1478, evm.TU.LG14.750 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc09g08280, gene.Posoc09g08290 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.60, evm.TU.Scaffold_4_RagTag.61 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29279 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20543, nbisL1-mrna-3116 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2216 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.34 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000235 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17630 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6333 |
| Salicaceae | Populus euphratica | 2 | populus_peu28131, populus_peu28132 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632004 |
| Solanaceae | Solanum chilense | 1 | SOLCI003387100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012189 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5238 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2286 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13800.v3.1 |