Basic Information
Locus ID:
Ag10G02551
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 230620876 | 230630003 | - | Ag10G02551 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.26 | 43,487.91 Da | 51.46 | 64.12 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF46934 | UBA-like | 120 | 162 | 1.41E-5 | IPR009060 |
| Gene3D | G3DSA:1.20.120.1920 | UBAP1 SOUBA domain | 86 | 168 | 5.0E-6 | IPR042575 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 255 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53330.1 | Ubiquitin-associated/translation elongation factor EF1B protein. | 0 |
| RefSeq | XP_017258509.1 | PREDICTED: uncharacterized protein LOC108227716 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A161YGY2 | UBA domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020296 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 18.511538 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.862783 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.410471 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.685568 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.720476 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 18.233871 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 24.74267 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.380688 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.368893 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 24.268154 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.266176 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.899981 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 22.587843 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.280304 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 25.541853 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 22.65958 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 28.319321 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 32.817211 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 26.72987 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 43.241848 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 53.845757 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 27.824348 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 27.52589 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 26.855251 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 29.77737 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 25.550051 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 26.305149 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 27.117836 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 28.481422 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 59.696423 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 38.269482 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 39.794968 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 98.751595 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 52.367313 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 96.461441 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 95.430656 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 98.018608 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 107.7061 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.631338 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 33.480846 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 26.367559 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 70.644043 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 54.018105 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 40.875641 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 47.364933 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 74.245834 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 41.49411 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.17696 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 20.01063 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.670641 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13919, jg2221 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3269 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018733 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052650 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15157, Sbi_jg55992 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26467 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019995 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01434, Sgl06596, Sgl06603 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000977, gene:ENSEOMG00000028950 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0004200, CQ.Regalona.r1.3BG0004320 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30184770 |
| Apiaceae | Apium graveolens | 1 | Ag10G02551 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G003180 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713487 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2713.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G03981 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G53330.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014603m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g15480.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g031630.2N, BniB08g016680.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1547 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1645 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g02950 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g25630 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2832 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04254 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.334, BH06.440, CH06.442 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0509800, gene-QOZ80_6BG0461860 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0654600.1 |
| Poaceae | Oryza coarctata | 2 | Oco11G002890, Oco12G002800 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g06530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G051200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402142 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G022370, Chr14G002180, Chr21G001290 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G239300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7BG002860 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G120000.1, TraesCS7B02G018300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb376120_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-40454 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29148 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1939 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g23030, gene.Posoc09g08440 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.58 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12750, nbisL1-mrna-29281 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3114 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2218, nbisL1-mrna-22469 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.33, evm.TU.utg000010l.421 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000398 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1128, nbisL1-mrna-2315 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6335 |
| Salicaceae | Populus euphratica | 2 | populus_peu28121, populus_peu29573 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132632015, gene-LOC132639520 |
| Solanaceae | Solanum chilense | 1 | SOLCI007262100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015117 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5243 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2274 |
| Zosteraceae | Zostera marina | 1 | Zosma05g25000.v3.1 |