halophFGD

Basic Information

Locus ID: Ag10G02543

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Arabinogalactan peptide

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	230426038	230426465	+	Ag10G02543

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.35	7,530.93 Da	49.34	137.94	1.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF06376	Arabinogalactan peptide	39	73	1.0E-19	IPR009424

Best hit

Source	Best Hit ID	Description
TAIR	AT5G24105.1	arabinogalactan protein 41. Encodes a putative arabinogalactan-protein (AGP41).
RefSeq	XP_017256739.1	PREDICTED: arabinogalactan peptide 20-like [Daucus carota subsp. sativus]
Swiss-Prot	Q8L9T8	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1
TrEMBL	A0A6P6TYA9	arabinogalactan protein 41-like OS=Coffea arabica OX=13443 GN=LOC113705627 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.325162	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.769703	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.065429	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.545425	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.858669	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.651729	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.333591	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.635979	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.314549	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.25896	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.451223	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	21.743649		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.645292		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	10.062031		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	322.33963		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.750729		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.836423		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.514181		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.030842	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.109737	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.246215	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	22.291023	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	120.452141	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	114.679268	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg23532, jg4745
Aizoaceae	Mesembryanthemum crystallinum	1	gene_9066
Amaranthaceae	Atriplex hortensis	2	Ah014510, Ah018719
Amaranthaceae	Beta vulgaris	3	BVRB_3g052530, BVRB_8g196120, BVRB_8g196160
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg24942, Sbi_jg8801
Amaranthaceae	Salicornia europaea	1	Seu_jg19804
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00007834
Amaranthaceae	Suaeda glauca	2	Sgl42183, Sgl46952
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0004290, CQ.Regalona.r1.3BG0004440 ... CQ.Regalona.r1.8AG0020450, CQ.Regalona.r1.8BG0021990
Apiaceae	Apium graveolens	3	Ag10G02543, Ag5G01693, Ag8G00200
Arecaceae	Cocos nucifera	3	COCNU_03G015990, COCNU_14G000110, scaffold023725G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103702938, gene-LOC103709178, gene-LOC113462799
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.3181.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G32274, Ftri4G10105, Ftri7G01908, Ftri7G04948 ... Ftri8G07351
Brassicaceae	Arabidopsis thaliana	4	AT2G46330.1, AT3G61640.1, AT5G24105.1, AT5G53250.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10001752m.g.v1.0, Thhalv10015233m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g28370.v2.2, Sp5g01770.v2.2, Sp6g15410.v2.2
Brassicaceae	Brassica nigra	9	BniB02g031510.2N, BniB02g077040.2N, BniB04g003360.2N ... BniB05g032860.2N, BniB06g061900.2N, BniB07g040320.2N, BniB08g016790.2N, BniB08g030110.2N, BniS06172g130.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq02G1229, Ceq03G0204, Ceq06G1473, Ceq06G1477, Ceq06G1592 ... Ceq09G1556
Casuarinaceae	Casuarina glauca	4	Cgl02G1268, Cgl03G0251, Cgl06G1531, Cgl06G1657
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g12320, gene.Cymno06g02940, gene.Cymno12g01800
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate03g17640, gene.Thate03g24990, gene.Thate09g13690 ... gene.Thate09g15230
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2844, evm.TU.LG04.751, evm.TU.LG10.1499
Plantaginaceae	Plantago ovata	2	Pov_00005318, Pov_00005424
Poaceae	Echinochloa crus-galli	13	AH02.2190, AH02.2583, AH05.610, AH06.1778, AH07.1146 ... BH02.2270, BH02.2686, BH05.662, BH06.1660, CH02.2423, CH02.3848, CH05.760, CH07.1006
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0027170, gene-QOZ80_1BG0077400 ... gene-QOZ80_2AG0108480, gene-QOZ80_5AG0401380, gene-QOZ80_5BG0449970, gene-QOZ80_6AG0530410, gene-QOZ80_6BG0484210
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0026190.1, HORVU.MOREX.r3.2HG0114790.1 ... HORVU.MOREX.r3.3HG0276880.1, HORVU.MOREX.r3.3HG0290200.1, HORVU.MOREX.r3.7HG0710400.1
Poaceae	Lolium multiflorum	3	gene-QYE76_010526, gene-QYE76_022406, gene-QYE76_034010
Poaceae	Oryza coarctata	10	Oco01G016190, Oco02G016440, Oco03G007190, Oco04G005640 ... Oco04G007530, Oco09G004710, Oco10G004060, Oco11G010010, Oco12G009970, Oco20G000970
Poaceae	Oryza sativa	5	LOC_Os01g46850.1, LOC_Os02g11880.1, LOC_Os02g16500.1 ... LOC_Os05g12580.1, LOC_Os10g06970.1
Poaceae	Paspalum vaginatum	6	gene-BS78_03G179600, gene-BS78_03G216900 ... gene-BS78_04G113600, gene-BS78_09G072000, gene-BS78_09G086900, gene-BS78_10G143400
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0205364, Pt_Chr0400100, Pt_Chr0501481, Pt_Chr0605005
Poaceae	Sporobolus alterniflorus	11	Chr02G016580, Chr03G010090, Chr03G012260, Chr06G030800 ... Chr08G012530, Chr10G013010, Chr11G009250, Chr15G022260, Chr18G004600, Chr21G011560, Chr22G012710
Poaceae	Thinopyrum elongatum	3	Tel1E01G210000, Tel3E01G408600, Tel7E01G578600
Poaceae	Triticum dicoccoides	5	gene_TRIDC1AG014360, gene_TRIDC1BG019680 ... gene_TRIDC3BG039970, gene_TRIDC7AG047980, gene_TRIDC7BG039480
Poaceae	Triticum aestivum	8	TraesCS1A02G113100.1, TraesCS1B02G133200.1 ... TraesCS1D02G114500.1, TraesCS3A02G238200.1, TraesCS3B02G266700.1, TraesCS7A02G343600.1, TraesCS7B02G239500.1, TraesCS7D02G336000.1
Poaceae	Zea mays	4	Zm00001eb203920_P002, Zm00001eb237880_P001 ... Zm00001eb350580_P001, Zm00001eb359480_P001
Poaceae	Zoysia japonica	5	nbis-gene-17953, nbis-gene-29038, nbis-gene-29632 ... nbis-gene-34158, nbis-gene-50941
Poaceae	Zoysia macrostachya	4	Zma_g10582, Zma_g12556, Zma_g15376, Zma_g27869
Portulacaceae	Portulaca oleracea	1	evm.TU.LG17.418
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g23050, gene.Posoc03g24290, gene.Posoc09g08540
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_16_RagTag.109, evm.TU.Scaffold_5_RagTag.587
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-10762, nbisL1-mrna-12759, nbisL1-mrna-13134 ... nbisL1-mrna-18281, nbisL1-mrna-22353, nbisL1-mrna-25600, nbisL1-mrna-29291
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-14820, nbisL1-mrna-15290, nbisL1-mrna-19434 ... nbisL1-mrna-20532, nbisL1-mrna-4392
Rhizophoraceae	Ceriops zippeliana	8	nbisL1-mrna-16797, nbisL1-mrna-16801, nbisL1-mrna-20374 ... nbisL1-mrna-2226, nbisL1-mrna-22475, nbisL1-mrna-4729, nbisL1-mrna-7380, nbisL1-mrna-8604
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.223, evm.TU.utg000006l.439
Rhizophoraceae	Kandelia obovata	7	Maker00000938, Maker00001531, Maker00008610, Maker00013172 ... Maker00014374, Maker00014993, Maker00017709
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10255, nbisL1-mrna-15985, nbisL1-mrna-1720 ... nbisL1-mrna-3567
Rhizophoraceae	Rhizophora mangle	8	nbisL1-mrna-10968, nbisL1-mrna-14777, nbisL1-mrna-19575 ... nbisL1-mrna-20516, nbisL1-mrna-21048, nbisL1-mrna-5461, nbisL1-mrna-6737, nbisL1-mrna-7234
Salicaceae	Populus euphratica	1	populus_peu34499
Solanaceae	Lycium barbarum	2	gene-LOC132638057, gene-LOC132645486
Solanaceae	Solanum chilense	4	SOLCI002064900, SOLCI002865600, SOLCI003906800 ... SOLCI005350900
Solanaceae	Solanum pennellii	1	gene-LOC114074443
Tamaricaceae	Reaumuria soongarica	5	gene_5248, gene_747, gene_748, gene_7998, gene_8953
Tamaricaceae	Tamarix chinensis	1	TC03G2141
Zosteraceae	Zostera marina	3	Zosma04g04540.v3.1, Zosma05g03440.v3.1, Zosma06g10470.v3.1