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Basic Information
Locus ID: Ag10G02525
Species & Taxonomic ID: Apium graveolens & 4045
Genome Assembly: GCA_009905375.1
Short Name: GLT1
Description: glutamate synthase
Maps and Mapping Data
Chromosome Start End Strand ID
chr10 230019313 230031874 + Ag10G02525
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.39 242,350.98 Da 34.37 83.69 -0.30
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd00713 GltS 112 534 0.0 -
CDD cd00982 gltB_C 1373 1622 9.37609E-151 IPR002489
CDD cd02808 GltS_FMN 946 1325 4.73621E-172 IPR002932
Pfam PF01493 GXGXG motif 1396 1582 2.7E-86 IPR002489
Pfam PF01645 Conserved region in glutamate synthase 944 1312 1.9E-152 IPR002932
Pfam PF00310 Glutamine amidotransferases class-II 112 539 4.4E-185 IPR017932
Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 1720 1829 1.4E-21 IPR028261
Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1842 2168 1.2E-23 IPR023753
Pfam PF04898 Glutamate synthase central domain 589 877 2.3E-112 IPR006982
SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 1839 2179 8.93E-61 IPR036188
SUPERFAMILY SSF51395 FMN-linked oxidoreductases 584 1346 7.79E-252 -
SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 112 542 1.03E-150 IPR029055
SUPERFAMILY SSF46548 alpha-helical ferredoxin 1695 1851 4.13E-36 -
SUPERFAMILY SSF69336 Alpha subunit of glutamate synthase, C-terminal domain 1365 1628 2.49E-98 IPR036485
Gene3D G3DSA:3.40.50.720 - 1842 1949 8.3E-15 -
Gene3D G3DSA:3.20.20.70 Aldolase class I 929 1367 1.6E-203 IPR013785
Gene3D G3DSA:3.50.50.60 - 1950 2112 2.6E-32 IPR036188
Gene3D G3DSA:2.160.20.60 - 1369 1636 3.0E-110 IPR036485
Gene3D G3DSA:1.10.1060.10 - 1637 1841 2.5E-40 IPR009051
Gene3D G3DSA:3.20.20.70 Aldolase class I 565 928 3.8E-133 IPR013785
Gene3D G3DSA:3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 112 551 4.4E-201 IPR029055
TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 1697 2182 1.7E-224 IPR006005
PIRSF PIRSF000187 GOGAT 31 2206 0.0 IPR012220
ProSiteProfiles PS51278 Glutamine amidotransferase type 2 domain profile. 112 516 23.863737 IPR017932
PRINTS PR00419 Adrenodoxin reductase family signature 1909 1919 5.9E-23 -
PRINTS PR00419 Adrenodoxin reductase family signature 1987 2001 5.9E-23 -
PRINTS PR00419 Adrenodoxin reductase family signature 1866 1879 5.9E-23 -
PRINTS PR00419 Adrenodoxin reductase family signature 1843 1865 5.9E-23 -
MobiDBLite mobidb-lite consensus disorder prediction 2186 2208 - -
Coils Coil Coil 1631 1654 - -
Gene Ontology
Biological Process:
GO:0006537 (glutamate biosynthetic process) GO:0008152 (metabolic process)
Molecular Function:
GO:0003824 (catalytic activity) GO:0005506 (iron ion binding) GO:0010181 (FMN binding) GO:0015930 (glutamate synthase activity) GO:0016040 (glutamate synthase (NADH) activity) GO:0016491 (oxidoreductase activity) GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors) GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor) GO:0050660 (flavin adenine dinucleotide binding) GO:0051536 (iron-sulfur cluster binding)
KEGG Pathway
KO Term:
K00264 (glutamate synthase (NADH) [EC:1.4.1.14])
Pathway:
ko00250 (Alanine, aspartate and glutamate metabolism) map00250 (Alanine, aspartate and glutamate metabolism) ko00910 (Nitrogen metabolism) map00910 (Nitrogen metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)
Reaction:
R00093 (2 L-Glutamate + NAD+ <=> L-Glutamine + 2-Oxoglutarate + NADH + H+) R00114 (2 L-Glutamate + NADP+ <=> L-Glutamine + 2-Oxoglutarate + NADPH + H+) R00248 (L-Glutamate + NADP+ + H2O <=> 2-Oxoglutarate + Ammonia + NADPH + H+)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G53460.1 NADH-dependent glutamate synthase 1. NADH-dependent glutamate synthase 0
RefSeq XP_017257430.1 PREDICTED: glutamate synthase [NADH], amyloplastic isoform X1 [Daucus carota subsp. sativus] 0
Swiss-Prot Q9LV03 Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GLT1 PE=1 SV=2 0
TrEMBL A0A161YGV4 glutamate synthase (NADH) OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020316 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
PRJNA723697SRX1069225246.75351Shengqin NO.2seedS1-1S1-1initial formation stage (S1)
PRJNA723697SRX1069225442.821175Shengqin NO.2seedS1-3S1-3initial formation stage (S1)
PRJNA723697SRX1069225543.940884Shengqin NO.2seedS3-1S3-1middle development stage (S3)
PRJNA723697SRX1069225647.582092Shengqin NO.2seedS3-2S3-2middle development stage (S3)
PRJNA723697SRX1069225745.969933Shengqin NO.2seedS3-3S3-3middle development stage (S3)
PRJNA723697SRX1069225883.237419Shengqin NO.2seedS5-1S5-1maturation stage (S5)
PRJNA723697SRX1069225970.87059Shengqin NO.2seedS5-2S5-2maturation stage (S5)
PRJNA723697SRX1069226049.226345Shengqin NO.2seedS5-3S5-3maturation stage (S5)
PRJNA884666SRX1772927271.420876celeryantherW99A-r1male sterile line 
PRJNA884666SRX1772927366.772728celeryantherW99A-r2male sterile line 
PRJNA884666SRX1772927471.711845celeryantherW99A-r3male sterile line 
PRJNA884666SRX1772927578.384949celeryantherW99B-r1maintainer line
PRJNA884666SRX1772927695.332237celeryantherW99B-r2maintainer line
PRJNA884666SRX1772927769.337578celeryantherW99B-r3maintainer line
PRJNA884180SRX1774388930.801874var. secalinum YablochnycollenchymaCol_S1_rep1-1
PRJNA884180SRX1774805627.291435var. secalinum YablochnycollenchymaCol_S1_rep3biological replicate 3
PRJNA884180SRX1774805724.539982var. secalinum YablochnycollenchymaCol_S1_rep4biological replicate 4
PRJNA884180SRX1774867850.554836var. secalinum YablochnyparenchymaPar_S1_rep1Biological replicate 1
PRJNA884180SRX1774867914.544655var. secalinum YablochnyparenchymaPar_S1_rep2Biological replicate 2
PRJNA884180SRX1774868065.765221var. secalinum YablochnyparenchymaPar_S1_rep3Biological replicate 3
PRJNA884180SRX1774868167.990135var. secalinum YablochnyparenchymaPar_S1_rep4Biological replicate 4
PRJNA884180SRX1774889888.924423var. secalinum Yablochnyvascular bundleVas_S1_rep1Biological replicate 1
PRJNA884180SRX1774889995.264229var. secalinum Yablochnyvascular bundleVas_S1_rep2Biological replicate 2
PRJNA884180SRX1774890042.598167var. secalinum Yablochnyvascular bundleVas_S1_rep3Biological replicate 3
PRJNA884180SRX1774890153.036797var. secalinum Yablochnyvascular bundleVas_S1_rep4Biological replicate 4
PRJNA884180SRX1774912969.012764var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep1Biological replicate 1
PRJNA884180SRX1774913035.995773var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep2Biological replicate 2
PRJNA884180SRX1774913172.197777var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep3Biological replicate 3
PRJNA884180SRX1774913257.493282var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep4Biological replicate 4
PRJNA1124269SRX2493641110.254437leafCK1replicate=biological replicate1
PRJNA1124269SRX2493641215.178245leafCK2replicate=biological replicate2
PRJNA1124269SRX2493641311.424475leafCK3replicate=biological replicate3
PRJNA1124269SRX2493641419.777599leafD1replicate=biological replicate1
PRJNA1124269SRX2493641513.033522leafD2replicate=biological replicate2
PRJNA1124269SRX2493641614.132876leafD3replicate=biological replicate3
PRJNA1124269SRX249364174.338593leafMD1replicate=biological replicate1
PRJNA1124269SRX249364184.719656leafMD2replicate=biological replicate2
PRJNA1124269SRX249364195.045381leafMD3replicate=biological replicate3
PRJNA387092SRX283330938.126793shanghaihuangxinleafleaves between 0.5 and 1 cm in breadth, folded;stage 2
PRJNA387092SRX283332115.229382shanghaihuangxinleafleaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sionstage 5
PRJNA387092SRX28333238.841143shanghaihuangxinleafleaves >3 cm, unfolded, with clearstem extensionstage 7
PRJNA543957SRX5879598105.012581Zhangzhou lvqingstemSe3100 ppm Na2SeO4
PRJNA543957SRX587959946.927876Zhangzhou lvqingstemSe2100 ppm Na2SeO4
PRJNA543957SRX587960024.191807Zhangzhou lvqingstemMock2mock
PRJNA543957SRX587960120.276392Zhangzhou lvqingstemMock1mock
PRJNA543957SRX587960283.057335Zhangzhou lvqingstemSe1100 ppm Na2SeO4
PRJNA543957SRX587960344.89048Zhangzhou lvqingstemMock3mock
PRJNA609149SRX781591720.523687Jinnan Shiqinflower budearly flower budearly flower bud
PRJNA609149SRX781591819.081234Jinnan Shiqinflower budmiddle flower budmiddle flower bud
PRJNA609149SRX781591917.920984Jinnan Shiqinflower budearly flowering periodearly flowering period
Network
🔍 Co-expression Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg13893, jg2196
Aizoaceae Mesembryanthemum crystallinum 1 gene_3295
Amaranthaceae Atriplex hortensis 1 Ah018647
Amaranthaceae Beta vulgaris 1 BVRB_3g052140
Amaranthaceae Salicornia bigelovii 2 Sbi_jg15107, Sbi_jg55939
Amaranthaceae Salicornia europaea 1 Seu_jg26420
Amaranthaceae Suaeda aralocaspica 1 GOSA_00020044
Amaranthaceae Suaeda glauca 5 Sgl01374, Sgl01440, Sgl01441, Sgl06449, Sgl06528
Amaranthaceae Chenopodium album 3 gene:ENSEOMG00000000510, gene:ENSEOMG00000031859 ...
gene:ENSEOMG00000043885
Amaranthaceae Chenopodium quinoa 2 CQ.Regalona.r1.3AG0004880, CQ.Regalona.r1.3BG0004920
Anacardiaceae Pistacia vera 1 pistato.v30185180
Apiaceae Apium graveolens 2 Ag10G02525, AgUnG00467
Arecaceae Cocos nucifera 2 COCNU_03G013130, scaffold000561G000020
Arecaceae Phoenix dactylifera 2 gene-LOC103708325, gene-LOC103713334
Asparagaceae Asparagus officinalis 1 AsparagusV1_05.2833.V1.1
Asteraceae Flaveria trinervia 1 Ftri18G12439
Brassicaceae Arabidopsis thaliana 1 AT5G53460.1
Brassicaceae Eutrema salsugineum 1 Thhalv10012414m.g.v1.0
Brassicaceae Schrenkiella parvula 1 Sp6g15593.v2.2
Brassicaceae Brassica nigra 1 BniB08g016600.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq09G1606
Casuarinaceae Casuarina glauca 1 Cgl09G1742
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno02g12650, gene.Cymno12g01560
Dunaliellaceae Dunaliella salina 1 Dusal.0052s00003.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate03g24920, gene.Thate09g14990
Nitrariaceae Nitraria sibirica 1 evm.TU.LG01.2897
Plantaginaceae Plantago ovata 1 Pov_00041146
Plumbaginaceae Limonium bicolor 2 Lb0G37740, Lb7G32942
Poaceae Echinochloa crus-galli 5 AH02.2769, AH05.1457, BH02.2852, BH05.1626, CH02.3687
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0028780, gene-QOZ80_1BG0079010 ...
gene-QOZ80_5AG0363860, gene-QOZ80_5BG0411960
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.3HG0280530.1
Poaceae Lolium multiflorum 2 gene-QYE76_054594, gene-QYE76_054602
Poaceae Oryza coarctata 4 Oco01G017400, Oco02G017650, Oco09G016320, Oco10G016130
Poaceae Oryza sativa 2 LOC_Os01g48960.1, LOC_Os05g48200.1
Poaceae Paspalum vaginatum 3 gene-BS78_03G233100, gene-BS78_03G236800 ...
gene-BS78_09G229900
Poaceae Puccinellia tenuiflora 1 Pt_Chr0602367
Poaceae Sporobolus alterniflorus 3 Chr02G012560, Chr03G013590, Chr08G013750
Poaceae Thinopyrum elongatum 1 Tel3E01G442300
Poaceae Triticum dicoccoides 2 gene_TRIDC3AG039670, gene_TRIDC3BG044820
Poaceae Triticum aestivum 3 TraesCS3A02G266300.1, TraesCS3B02G299800.1 ...
TraesCS3D02G266400.1
Poaceae Zea mays 3 Zm00001eb156610_P002, Zm00001eb295220_P001 ...
Zm00001eb360480_P005
Poaceae Zoysia japonica 2 nbis-gene-12580, nbis-gene-26118
Poaceae Zoysia macrostachya 2 Zma_g10886, Zma_g8437
Portulacaceae Portulaca oleracea 1 evm.TU.LG06.1967
Posidoniaceae Posidonia oceanica 2 gene.Posoc08g13790, gene.Posoc09g09130
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_1_RagTag.622, evm.TU.Scaffold_2_RagTag.1648
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-3559, nbisL1-mrna-7507
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-2555, nbisL1-mrna-921
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-14013, nbisL1-mrna-5641
Rhizophoraceae Kandelia candel 2 evm.TU.utg000009l.314, evm.TU.utg000012l.386
Rhizophoraceae Kandelia obovata 2 Maker00005974, Maker00011451
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-2744, nbisL1-mrna-8412
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-16769, nbisL1-mrna-743
Salicaceae Populus euphratica 3 populus_peu28067, populus_peu29502, populus_peu29503
Solanaceae Lycium barbarum 1 gene-LOC132632063
Solanaceae Solanum pennellii 1 gene-LOC107013700
Tamaricaceae Reaumuria soongarica 1 gene_5260
Tamaricaceae Tamarix chinensis 1 TC06G1506
Zosteraceae Zostera marina 2 Zosma01g06270.v3.1, Zosma01g22390.v3.1
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