halophFGD

Basic Information

Locus ID: Ag10G02518

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Phosphatidylinositol 4-kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	229692909	229696330	+	Ag10G02518

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.03	63,569.22 Da	39.79	93.91	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd17039	Ubl_ubiquitin_like	102	169	2.02563E-9	-
Pfam	PF00454	Phosphatidylinositol 3- and 4-kinase	269	520	1.1E-51	IPR000403
Pfam	PF00240	Ubiquitin family	102	174	7.8E-9	IPR000626
Pfam	PF00240	Ubiquitin family	30	96	1.1E-15	IPR000626
SUPERFAMILY	SSF54236	Ubiquitin-like	28	97	6.22E-15	IPR029071
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	410	574	8.87E-8	IPR011009
SUPERFAMILY	SSF54236	Ubiquitin-like	98	175	2.99E-13	IPR029071
Gene3D	G3DSA:3.10.20.90	-	101	189	3.8E-12	-
Gene3D	G3DSA:3.10.20.90	-	21	100	1.2E-13	-
SMART	SM00213	ubq_7	24	95	1.3E-8	IPR000626
SMART	SM00213	ubq_7	100	173	6.5E-5	IPR000626
ProSiteProfiles	PS50053	Ubiquitin domain profile.	100	177	14.57784	IPR000626
ProSiteProfiles	PS50053	Ubiquitin domain profile.	26	95	14.164107	IPR000626

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K08770 (ubiquitin C)

Pathway:

ko03320 (PPAR signaling pathway) map03320 (PPAR signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G24240.1	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein.
RefSeq	XP_017257682.1	PREDICTED: phosphatidylinositol 4-kinase gamma 3-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9FNF8	Phosphatidylinositol 4-kinase gamma 3 OS=Arabidopsis thaliana OX=3702 GN=PI4KG3 PE=2 SV=1
TrEMBL	A0A5J5ASS5	1-phosphatidylinositol 4-kinase OS=Nyssa sinensis OX=561372 GN=F0562_030966 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	20.973944	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	12.151129	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	11.008274	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	12.740212	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	12.416469	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	6.0975	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	8.385939	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	6.282263	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	23.116972	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	24.855322	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	23.370333	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	24.192223	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	22.505058	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	19.877964	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	20.220179	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	20.320356	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	7.303502	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	7.833992	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	9.133604	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	5.431082	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	4.133513	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	7.216156	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	5.428289	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	8.846173	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	9.801454	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	8.154934	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	8.046571	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	4.318106	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	6.948896	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.788461		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.784493		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.939094		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	3.905189		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	9.467111		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	3.128376		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.796471		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.620332		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.501441		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	7.799787	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.801073	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.057569	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.983008	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	2.661868	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.779456	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.746757	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.643193	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.754968	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	16.831318	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	12.088422	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	11.297236	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg13882, jg13883, jg2008, jg2192, jg29456, jg4718
Aizoaceae	Mesembryanthemum crystallinum	3	gene_1625, gene_2235, gene_3314
Amaranthaceae	Atriplex hortensis	3	Ah003889, Ah018619, Ah022850
Amaranthaceae	Beta vulgaris	3	BVRB_1g003030, BVRB_3g051950, BVRB_5g098650
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg15081, Sbi_jg24055, Sbi_jg3942, Sbi_jg49160 ... Sbi_jg55891, Sbi_jg7898
Amaranthaceae	Salicornia europaea	3	Seu_jg12143, Seu_jg26389, Seu_jg6085
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000589, GOSA_00010661, GOSA_00020072
Amaranthaceae	Suaeda glauca	7	Sgl01334, Sgl06414, Sgl10903, Sgl16257, Sgl16295, Sgl52243 ... Sgl57499
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000003701, gene:ENSEOMG00000004904 ... gene:ENSEOMG00000016246, gene:ENSEOMG00000022595, gene:ENSEOMG00000031073, gene:ENSEOMG00000034272, gene:ENSEOMG00000043074, gene:ENSEOMG00000047757
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0002220, CQ.Regalona.r1.2BG0026250 ... CQ.Regalona.r1.3AG0005150, CQ.Regalona.r1.3BG0005160, CQ.Regalona.r1.5AG0005690, CQ.Regalona.r1.5BG0005990
Anacardiaceae	Pistacia vera	2	pistato.v30134230, pistato.v30164550
Apiaceae	Apium graveolens	4	Ag10G02518, Ag5G00989, Ag6G02050, Ag7G00909
Arecaceae	Cocos nucifera	2	COCNU_02G004050, COCNU_03G011460
Arecaceae	Phoenix dactylifera	2	gene-LOC103702517, gene-LOC103714200
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.1432.V1.1, AsparagusV1_01.500.V1.1
Asteraceae	Flaveria trinervia	5	Ftri14G15872, Ftri15G01613, Ftri16G33969, Ftri3G09208 ... Ftri7G16031
Brassicaceae	Arabidopsis thaliana	3	AT1G64460.1, AT2G46500.1, AT5G24240.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10001379m.g.v1.0, Thhalv10003896m.g.v1.0 ... Thhalv10023399m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g00280.v2.2, Sp2g23120.v2.2, Sp4g28520.v2.2
Brassicaceae	Brassica nigra	6	BniB01g000950.2N, BniB02g077110.2N, BniB04g022860.2N ... BniB04g023230.2N, BniB07g040240.2N, BniB08g030220.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G0553, Ceq09G1629
Casuarinaceae	Casuarina glauca	2	Cgl03G0661, Cgl09G1762
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g11220, gene.Cymno16g03980
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g23650, gene.Thate03g14930, gene.Thate09g07850
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-2833
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG10.1551
Plantaginaceae	Plantago ovata	3	Pov_00010819, Pov_00017886, Pov_00028478
Plumbaginaceae	Limonium bicolor	4	Lb1G03684, Lb1G04183, Lb2G08138, Lb2G08208
Poaceae	Echinochloa crus-galli	9	AH06.1677, AH07.1426, BH05.1183, BH06.1591, BH07.1386 ... CH01.2668, CH05.1526, CH06.1746, CH07.1103
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0109870, gene-QOZ80_5BG0409580 ... gene-QOZ80_6AG0530970, gene-QOZ80_6BG0484790
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0711430.1
Poaceae	Lolium multiflorum	1	gene-QYE76_033873
Poaceae	Oryza coarctata	5	Oco03G008000, Oco09G018250, Oco10G018200, Oco11G009630 ... Oco12G009600
Poaceae	Oryza sativa	4	LOC_Os01g13360.1, LOC_Os02g18840.1, LOC_Os05g51230.1 ... LOC_Os06g23290.5
Poaceae	Paspalum vaginatum	2	gene-BS78_09G256500, gene-BS78_10G150100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0201890, Pt_Chr0402791
Poaceae	Sporobolus alterniflorus	4	Chr10G012730, Chr11G009510, Chr14G011850, Chr21G011840
Poaceae	Thinopyrum elongatum	1	Tel7E01G584500
Poaceae	Triticum dicoccoides	2	gene_TRIDC7AG047470, gene_TRIDC7BG040150
Poaceae	Triticum aestivum	3	TraesCS7A02G332000.1, TraesCS7B02G243500.1 ... TraesCS7D02G340200.1
Poaceae	Zea mays	3	Zm00001eb278110_P001, Zm00001eb345210_P002 ... Zm00001eb382540_P001
Poaceae	Zoysia japonica	3	nbis-gene-35457, nbis-gene-35458, nbis-gene-47908
Poaceae	Zoysia macrostachya	2	Zma_g30124, Zma_g32323
Portulacaceae	Portulaca oleracea	10	evm.TU.LG01.1547, evm.TU.LG04.2149, evm.TU.LG04.3261 ... evm.TU.LG06.164, evm.TU.LG10.118, evm.TU.LG14.798, evm.TU.LG16.339, evm.TU.LG17.119, evm.TU.LG19.1286, evm.TU.LG24.1282
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g17250, gene.Posoc09g05200
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_16_RagTag.71, evm.TU.Scaffold_1_RagTag.632 ... evm.TU.Scaffold_5_RagTag.621
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-10732, nbisL1-mrna-21609, nbisL1-mrna-22319 ... nbisL1-mrna-7490
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-20814, nbisL1-mrna-20852, nbisL1-mrna-4359
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-11280, nbisL1-mrna-20412, nbisL1-mrna-5654 ... nbisL1-mrna-7403
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000006l.669, evm.TU.utg000012l.394 ... evm.TU.utg000022l.454
Rhizophoraceae	Kandelia obovata	3	Maker00011251, Maker00013464, Maker00014405
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10233, nbisL1-mrna-17402, nbisL1-mrna-3593 ... nbisL1-mrna-8403
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-6775, nbisL1-mrna-7263, nbisL1-mrna-753
Salicaceae	Populus euphratica	4	populus_peu03700, populus_peu27559, populus_peu28031 ... populus_peu29478
Solanaceae	Lycium barbarum	4	gene-LOC132632077, gene-LOC132634773, gene-LOC132640695 ... gene-LOC132645434
Solanaceae	Solanum chilense	4	SOLCI001232100, SOLCI002349300, SOLCI003373400 ... SOLCI005911700
Solanaceae	Solanum pennellii	4	gene-LOC107006642, gene-LOC107014484, gene-LOC107018462 ... gene-LOC107026758
Tamaricaceae	Reaumuria soongarica	3	STRG.10857_chr07_+, STRG.23310_chr05_+, STRG.28844_chr11_-
Tamaricaceae	Tamarix chinensis	3	TC01G3088, TC03G1966, TC08G1378
Zosteraceae	Zostera marina	1	Zosma06g12840.v3.1