Basic Information
Locus ID:
Ag10G02501
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Histone-lysine n-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 229356730 | 229360879 | + | Ag10G02501 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 39,427.01 Da | 39.07 | 70.63 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15543 | PHD_RSF1 | 34 | 78 | 6.85055E-18 | - |
| CDD | cd10539 | SET_ATXR5_6-like | 211 | 348 | 7.10392E-92 | - |
| Pfam | PF00856 | SET domain | 55 | 336 | 5.8E-6 | IPR001214 |
| Pfam | PF00628 | PHD-finger | 33 | 79 | 8.5E-10 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 27 | 85 | 1.35E-16 | IPR011011 |
| SUPERFAMILY | SSF82199 | SET domain | 206 | 336 | 2.49E-19 | - |
| Gene3D | G3DSA:2.170.270.10 | SET domain | 119 | 348 | 2.4E-71 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 100 | 1.6E-20 | IPR013083 |
| SMART | SM00249 | PHD_3 | 33 | 79 | 7.6E-11 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 31 | 81 | 9.943899 | IPR019787 |
| ProSiteProfiles | PS50280 | SET domain profile. | 214 | 336 | 14.234247 | IPR001214 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 34 | 78 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24330.1 | ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6. Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. | 0 |
| RefSeq | XP_017255827.1 | PREDICTED: histone-lysine N-methyltransferase ATXR6 [Daucus carota subsp. sativus] | 0 |
| Q9FNE9 | Histone-lysine N-methyltransferase ATXR6 OS=Arabidopsis thaliana OX=3702 GN=ATXR6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9G7K2 | Histone-lysine N-methyltransferase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26559 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.139308 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.071331 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.053504 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.549826 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.049743 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.653699 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.717404 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.84411 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 34.412502 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 37.384022 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 36.784882 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 38.560188 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 28.736031 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 25.840473 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.823624 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.552631 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.212383 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.173518 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.978758 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.412801 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.958515 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.924534 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.205569 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.823856 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.159753 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.532949 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.64232 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.276894 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.115397 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.278842 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.393482 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.515273 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.006193 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.514429 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.72518 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.849408 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.399658 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.002753 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.28631 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.047194 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.462783 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.184788 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.972867 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.125618 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.219721 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.973487 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.139157 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 30.472858 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.034412 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.111586 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13858, jg17162 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16253, gene_25231 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah018576, Ah027130 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g051490, BVRB_6g133010 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg13401, Sbi_jg15031, Sbi_jg52450, Sbi_jg55846 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg26344, Seu_jg9395 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00013404, GOSA_00017793 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl01283, Sgl06365, Sgl33734, Sgl39046 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000003219, gene:ENSEOMG00000003327 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3BG0005620, CQ.Regalona.r1.6AG0022380 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30110550, pistato.v30165220 |
| Apiaceae | Apium graveolens | 2 | Ag10G02501, Ag6G01690 |
| Arecaceae | Cocos nucifera | 4 | COCNU_09G001550, COCNU_09G001560, COCNU_15G001330 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695768, gene-LOC103703153, gene-LOC103714298 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.409.V1.1, AsparagusV1_09.142.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G09679, Ftri18G33445, Ftri1G24812 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G09790.2, AT5G24330.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10004504m.g.v1.0, Thhalv10013971m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g22990.v2.2, Sp6g33610.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g026650.2N, BniB02g052050.2N, BniB02g077240.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G1889, Ceq09G1645 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G1963, Cgl09G1779 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g12230, gene.Cymno04g00470, gene.Cymno10g10380 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0388s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g28930, gene.Thate06g11610, gene.Thate08g17960 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.850, evm.TU.LG05.1189 |
| Plantaginaceae | Plantago ovata | 8 | Pov_00009318, Pov_00010968, Pov_00012282, Pov_00020494 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G07187, Lb3G21033 |
| Poaceae | Echinochloa crus-galli | 9 | AH05.519, AH05.520, AH07.218, BH05.575, BH07.249, CH02.4732 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0047820, gene-QOZ80_1BG0097650 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0325840.1, HORVU.MOREX.r3.6HG0548870.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_019838, gene-QYE76_058649 |
| Poaceae | Oryza coarctata | 4 | Oco01G030710, Oco02G031830, Oco03G001240, Oco04G001130 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g73460.1, LOC_Os02g03030.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G415300, gene-BS78_04G018300 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0600924, Pt_Chr0600925, Pt_Chr0600938 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G000430, Chr05G034360, Chr07G012960, Chr15G026960 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G855700, Tel3E01G855800, Tel6E01G159600 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2BG078360, gene_TRIDC3AG072830 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS3A02G513600.1, TraesCS3B02G582000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb230520_P001, Zm00001eb362400_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10780, nbis-gene-52135 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12105, Zma_g9418 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1575, evm.TU.LG03.2453, evm.TU.LG14.827 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g01150, gene.Posoc06g11390 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.420, evm.TU.Scaffold_6_RagTag.1551 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1493, nbisL1-mrna-17620 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-17763, nbisL1-mrna-6492, nbisL1-mrna-6512 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12214, nbisL1-mrna-6155 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.942, evm.TU.utg000019l.967 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00007542, Maker00012683, Maker00012906 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15052, nbisL1-mrna-6367 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-2145, nbisL1-mrna-25348, nbisL1-mrna-4511 |
| Salicaceae | Populus euphratica | 4 | populus_peu13611, populus_peu22776, populus_peu27990 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132614972, gene-LOC132632114 |
| Solanaceae | Solanum chilense | 2 | SOLCI004764400, SOLCI006579800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003477, gene-LOC107012768 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.6144_chr04_+, gene_2751 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G2662, TC11G0325 |
| Zosteraceae | Zostera marina | 2 | Zosma02g20620.v3.1, Zosma05g33930.v3.1 |