Basic Information
Locus ID:
Ag10G02497
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 229127964 | 229128842 | - | Ag10G02497 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 16,589.60 Da | 44.10 | 82.36 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017255960.1 | PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164WUZ5 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020347 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.136401 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.419518 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.933521 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.8876 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.307359 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.214059 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.386296 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.480519 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 10.850855 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.983829 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.852884 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 9.952796 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.427726 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.646914 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 31.009401 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 19.784155 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 30.278801 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 19.316442 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 22.102184 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.654822 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.619381 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.872068 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.653507 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.451573 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 16.034071 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 25.550161 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 24.171083 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.051481 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 35.255692 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 20.466457 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 22.596441 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 24.184572 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.038376 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.557503 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 14.747908 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 24.539146 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 22.025673 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 21.419369 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 31.741129 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 44.69722 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 35.882362 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.271211 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.41022 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.601389 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.767574 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.622885 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.369094 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.661987 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.948349 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.142814 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg13849 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16251 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018571 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g051410 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15019, Sbi_jg55839 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26338 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017799 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01276, Sgl06358 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000032140, gene:ENSEOMG00000045595 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0005600, CQ.Regalona.r1.3BG0005680 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165390 |
| Apiaceae | Apium graveolens | 1 | Ag10G02497 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719478, gene-LOC120108113 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g08830 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0641s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g18690 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1219 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010991 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21039 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.3034, BH03.2087, BH07.2858, CH07.2937 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0141280, gene-QOZ80_2BG0196880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0604920.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G018450, Oco04G019180 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g46140.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G235800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0203771, Pt_Chr0203774, Pt_Chr0203786 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G004890, Chr09G023230, Chr15G006400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG040140, gene_TRIDC6BG047080 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G261600.1, TraesCS6B02G288900.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb187590_P001, Zm00001eb421680_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16897 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1704 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g12580 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1080 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-912, nbisL1-mrna-914 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19266 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2338 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.597 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001964 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6120 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1768 |
| Salicaceae | Populus euphratica | 1 | populus_peu27978 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632128 |
| Solanaceae | Solanum chilense | 1 | SOLCI006441700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012564 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.6139_chr04_+ |
| Zosteraceae | Zostera marina | 1 | Zosma05g33740.v3.1 |