Basic Information
Locus ID:
Ag10G02484
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
dUTPase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 228737305 | 228737657 | + | Ag10G02484 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 8,473.58 Da | 47.92 | 95.00 | -0.14 |
Protein Domain:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46940.1 | DUTP-PYROPHOSPHATASE-LIKE 1. | 0 |
| RefSeq | XP_017257107.1 | PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase-like [Daucus carota subsp. sativus] | 0 |
| P32518 | Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Solanum lycopersicum OX=4081 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164WUN0 | Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.961361 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.376505 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 31.910862 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 39.104736 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.12298 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.046225 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.300766 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.330066 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.70946 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.40559 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.571276 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.733736 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.85458 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.57461 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.644573 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.00417 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.064109 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.498457 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.437396 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.135764 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.302535 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 26.933634 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.298563 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.463866 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11888, jg6308, jg675 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15111 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004671, Ah008657 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g108170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24323, Sbi_jg8156 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11863 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001736 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl52461, Sgl52517, Sgl57751 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005768, gene:ENSEOMG00000022201 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0001100 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30046350 |
| Apiaceae | Apium graveolens | 1 | Ag10G02484 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G002660, COCNU_06G019160 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702703, gene-LOC103702704 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G46940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011147m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g14800.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1609 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1735 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g01380 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0066s00022.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 13 | gene.Thate01g08870, gene.Thate01g20710, gene.Thate01g23280 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1318 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.2315, evm.TU.LG06.562, evm.TU.LG06.563 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007310 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34809 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1406, BH01.1243, CH01.1287 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0222340, gene-QOZ80_3BG0267430 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0234080.1, HORVU.MOREX.r3.4HG0333750.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063186 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g46640.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G131100 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr12G028640 |
| Poaceae | Thinopyrum elongatum | 4 | Tel4E01G042500, Tel5E01G035200, Tel7E01G727900 ... |
| Poaceae | Triticum dicoccoides | 21 | gene_TRIDC1AG020100, gene_TRIDC1AG058070 ... |
| Poaceae | Triticum aestivum | 20 | TraesCS1A02G090500.1, TraesCS1B02G469900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb052270_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20583 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3116 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2921, evm.TU.LG16.693 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g12500, gene.Posoc03g26400, gene.Posoc03g26420 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.572 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19059 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13396 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13996 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.553 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5868 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12502 |
| Salicaceae | Populus euphratica | 3 | populus_peu07983, populus_peu14231, populus_peu30722 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132608707, gene-LOC132628007, gene-LOC132645236 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI000857100, SOLCI001544800, SOLCI006483600 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107010612, gene-LOC107012767, gene-LOC107016371 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.30915_chr11_-, gene_1727 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2234 |
| Zosteraceae | Zostera marina | 1 | Zosma03g15860.v3.1 |