Basic Information
Locus ID:
Ag10G02417
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transcription initiation factor TFIID subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 227421790 | 227430795 | - | Ag10G02417 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 28,545.85 Da | 44.01 | 88.70 | -0.34 |
Protein Domain:
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55300.1 | TBP-associated factor 7. | 0 |
| RefSeq | XP_043690656.1 | transcription initiation factor TFIID subunit 7 isoform X1 [Telopea speciosissima] | 0 |
| B9DG24 | Transcription initiation factor TFIID subunit 7 OS=Arabidopsis thaliana OX=3702 GN=TAF7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A834Z2W7 | TAFII55_N domain-containing protein OS=Tetracentron sinense OX=13715 GN=HHK36_017506 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.401666 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.98153 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.547594 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.806062 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.386496 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.237418 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.058084 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.517615 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.09315 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.530017 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.591938 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.408025 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.210266 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.658353 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.559683 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.101694 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.630145 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.699238 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.46242 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.330221 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.244911 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.152591 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.470283 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.073598 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.905343 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.207942 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.353356 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.433936 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.910888 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.153239 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.296188 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.004566 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.19287 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.268137 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.808307 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.016414 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.53062 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.29462 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.581261 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.207375 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.881694 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.273837 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36150 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16797 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021273 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g078640 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg28720, Sbi_jg28725, Sbi_jg2910, Sbi_jg2921, Sbi_jg2930 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg6835, Seu_jg6953 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005813 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71171, Sgl74753 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014721, gene:ENSEOMG00000030480 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0019060, CQ.Regalona.r1.3BG0019670 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30050350, pistato.v30086030 |
| Apiaceae | Apium graveolens | 2 | Ag10G02417, AgUnG01065 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G011280 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716825, gene-LOC103721202 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.700.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G09674, Ftri12G12246 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G55300.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011786m.g.v1.0, Thhalv10012232m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g40960.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g054300.2N, BniB06g026130.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2349 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G2506 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g04050 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0383s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g00070 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.402 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00009317, Pov_00009322, Pov_00020498 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33210 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2528, BH02.2629, CH02.2862 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0026590, gene-QOZ80_1BG0076880 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0275900.1, HORVU.MOREX.r3.7HG0732830.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_054204, gene-QYE76_054248 |
| Poaceae | Oryza coarctata | 4 | Oco01G015830, Oco02G016140, Oco09G007050, Oco10G007180 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g46020.1, LOC_Os05g28010.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G212000, gene-BS78_08G101300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604951 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G012560, Chr05G019570, Chr08G012840 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G397500, Tel7E01G764000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG035030, gene_TRIDC3BG039370 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS3A02G233900.1, TraesCS3A02G234400.3 ... |
| Poaceae | Zea mays | 5 | Zm00001eb059570_P001, Zm00001eb068820_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25911 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10759 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g08750 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.211 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21914 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18406 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7502 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.137 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017636 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6765 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12551 |
| Salicaceae | Populus euphratica | 2 | populus_peu04448, populus_peu35266 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627651 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114076925 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5512 |
| Zosteraceae | Zostera marina | 1 | Zosma03g15250.v3.1 |