Basic Information
Locus ID:
Ag10G02407
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 227284609 | 227287759 | + | Ag10G02407 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 33,608.56 Da | 54.00 | 65.42 | -0.52 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53490.2 | - | 0 |
| RefSeq | XP_017246366.1 | PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X3 [Daucus carota subsp. sativus] | 0 |
| F4HRI2 | E3 ubiquitin-protein ligase CCNB1IP1 homolog OS=Arabidopsis thaliana OX=3702 GN=HEI10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A162ADM4 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013348 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.353035 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.083747 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.238563 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.206483 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.088768 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.526924 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.723778 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.768649 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.092211 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.521987 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.715288 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.172811 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.211986 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.229015 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.301167 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.392719 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.596196 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.057336 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.630468 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.062382 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.90231 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.720377 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.634548 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19159, jg21203, jg38228 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7569 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007597 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g084980 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19091, Sbi_jg37516 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5358 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016077 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl20568, Sgl20569, Sgl21934, Sgl25952, Sgl27210, Sgl27219 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000008559, gene:ENSEOMG00000028153 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0017180 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30163080 |
| Apiaceae | Apium graveolens | 3 | Ag10G02407, Ag11G03196, Ag11G03197 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G002290 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708674, gene-LOC103710260 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1394.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G16677 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G53490.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011691m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g40020.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB04g055870.2N, BniB04g055880.2N, BniB06g027200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0899 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1023 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g11050 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0028s00038.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g23410 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9272 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1385 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00009430, Pov_00013582 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34962 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1976, BH06.1812, CH06.2000 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0107130, gene-QOZ80_2BG0160750 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0580750.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021834 |
| Poaceae | Oryza coarctata | 2 | Oco03G006280, Oco04G006490 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g13810.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G096400, gene-BS78_10G162700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0206378 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G032280, Chr0G014340, Chr10G016220, Chr11G006180 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G927500, Tel6E01G376300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG029580, gene_TRIDC6BG034410 |
| Poaceae | Triticum aestivum | 3 | TraesCS6B02G220900.2, TraesCS6D02G182400.2 ... |
| Poaceae | Zea mays | 6 | Zm00001eb164550_P001, Zm00001eb239370_P002 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10246, nbis-gene-34248 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g15429, Zma_g30685 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.1107 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g17600 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.136 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11107 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1737 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10651 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013969 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9104 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15326 |
| Salicaceae | Populus euphratica | 3 | populus_peu00755, populus_peu17720, populus_peu17729 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132606080, gene-LOC132609254, gene-LOC132636393 |
| Solanaceae | Solanum chilense | 1 | SOLCI000218800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027333 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7756 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0050 |
| Zosteraceae | Zostera marina | 1 | Zosma06g00010.v3.1 |