Basic Information
Locus ID:
Ag10G02401
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 227187148 | 227196759 | + | Ag10G02401 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 103,752.84 Da | 53.91 | 70.64 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14212 | PKc_YAK1 | 121 | 463 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 121 | 463 | 4.0E-49 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 117 | 485 | 2.7E-78 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 201 | 464 | 9.9E-65 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 86 | 200 | 4.6E-33 | - |
| SMART | SM00220 | serkin_6 | 121 | 463 | 2.1E-79 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 121 | 463 | 35.792248 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 127 | 150 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 244 | 256 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 639 | 681 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 905 | 944 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 681 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35980.1 | yeast YAK1-related gene 1. | 0 |
| RefSeq | XP_017257729.1 | PREDICTED: serine/threonine-protein kinase minibrain [Daucus carota subsp. sativus] | 0 |
| Q8RWH3 | Dual specificity protein kinase YAK1 homolog OS=Arabidopsis thaliana OX=3702 GN=YAK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161YGL2 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020436 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 49.45237 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 37.82552 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 41.154278 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 42.614155 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 47.025326 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 31.792505 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 33.889679 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 29.018087 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 66.118126 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 60.950768 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 68.558586 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 64.367302 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 65.883926 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 57.965538 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 50.294113 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 49.364941 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 45.848217 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 60.947765 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 44.459473 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 60.483673 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 62.691708 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 51.459343 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 57.429523 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 53.941929 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 47.854511 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 55.092045 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 56.518211 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 44.382629 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 60.702305 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 19.882662 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 22.356318 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 17.128241 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.783747 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 31.252823 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 25.000214 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 23.337286 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 18.009399 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 20.097504 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 37.128048 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 32.632275 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 28.649935 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 77.717178 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 59.787731 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 67.898033 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 73.512016 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 70.274986 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 84.566925 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 54.431446 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 55.160557 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 58.274567 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13776, jg2046 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16407 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018293 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g049430 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14799, Sbi_jg55582 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26138 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018002 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01047, Sgl06135 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001512, gene:ENSEOMG00000031172 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0007650, CQ.Regalona.r1.3BG0007760 |
| Apiaceae | Apium graveolens | 1 | Ag10G02401 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G015820, COCNU_10G009990 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103713009, gene-LOC103718768, gene-LOC120103869 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3475.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G15471, Ftri1G16684 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G35980.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003604m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g06110.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g031550.2N, BniB06g060890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1723 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl09G1869, Cgl09G1896 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g01880, gene.Cymno18g04340 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0472s00002.v1.0, Dusal.0613s00005.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g05220 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7997 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1866 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011327 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04121, Lb3G19253 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.3128, AH09.2201, BH07.2956, BH09.2372, CH07.3030 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0142290, gene-QOZ80_2BG0197780 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0193090.1, HORVU.MOREX.r3.6HG0607110.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024633, gene-QYE76_046130 |
| Poaceae | Oryza coarctata | 4 | Oco03G019140, Oco04G019910, Oco07G015120, Oco08G014620 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g47410.1, LOC_Os04g51370.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G245900, gene-BS78_06G217900 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0203897, Pt_Chr0203906, Pt_Chr0301413, Pt_Chr0301426 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G032020, Chr06G004270, Chr06G004280, Chr06G004290 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G738900, Tel6E01G497500 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG062820, gene_TRIDC2BG066620 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G436800.1, TraesCS2B02G456400.3 ... |
| Poaceae | Zea mays | 3 | Zm00001eb071720_P001, Zm00001eb251910_P006 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-22770, nbis-gene-5757, nbis-gene-9015 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14216, Zma_g20385, Zma_g21918 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.2, evm.TU.LG09.1266, evm.TU.LG09.1267 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g03510 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.1225, evm.TU.Scaffold_1_RagTag.551 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-18159, nbisL1-mrna-3457, nbisL1-mrna-7648 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14391, nbisL1-mrna-9700 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13952, nbisL1-mrna-8490 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000004l.141, add.evm.TU.utg000007l.139 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005394 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12773, nbisL1-mrna-23230 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10860, nbisL1-mrna-16435 |
| Salicaceae | Populus euphratica | 4 | populus_peu09157, populus_peu16276, populus_peu19249 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632281 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014386 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9903 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1188 |
| Zosteraceae | Zostera marina | 2 | Zosma02g15550.v3.1, Zosma06g03500.v3.1 |