Basic Information
Locus ID:
Ag10G02381
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the cyclin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 226637245 | 226644155 | + | Ag10G02381 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 50,169.15 Da | 44.70 | 66.19 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00043 | CYCLIN | 34 | 109 | 1.56029E-14 | IPR013763 |
| CDD | cd00043 | CYCLIN | 153 | 240 | 5.89777E-8 | IPR013763 |
| Pfam | PF00134 | Cyclin, N-terminal domain | 11 | 147 | 6.5E-13 | IPR006671 |
| SUPERFAMILY | SSF47954 | Cyclin-like | 152 | 252 | 1.55E-29 | IPR036915 |
| SUPERFAMILY | SSF47954 | Cyclin-like | 4 | 147 | 5.41E-38 | IPR036915 |
| Gene3D | G3DSA:1.10.472.10 | - | 151 | 250 | 2.7E-26 | - |
| Gene3D | G3DSA:1.10.472.10 | - | 7 | 149 | 3.4E-46 | - |
| SMART | SM00385 | cyclin_7 | 156 | 241 | 8.1E-6 | IPR013763 |
| SMART | SM00385 | cyclin_7 | 40 | 143 | 2.5E-8 | IPR013763 |
| PIRSF | PIRSF036580 | Cyclin_L | 1 | 436 | 4.0E-127 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 436 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26430.4 | - | 0 |
| RefSeq | XP_017259108.1 | PREDICTED: cyclin-L1-1 [Daucus carota subsp. sativus] | 0 |
| Q8RWV3 | Cyclin-L1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCL1-1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A164WSF7 | CYCLIN domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020452 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.199731 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.777206 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.325247 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.021184 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.82089 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.5201 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.440457 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.19665 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.412655 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 16.867874 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.939262 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.157618 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.826771 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.438091 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.266391 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.94019 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.116866 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.384204 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.504225 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.142646 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.816963 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.181534 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.275431 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.284223 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.248423 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.712113 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.734203 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.71346 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.871858 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.322284 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.193043 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.719375 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.082024 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.246543 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.064275 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.58329 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.029865 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.442724 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.941309 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.440456 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.580406 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 20.033422 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.75297 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 13.701911 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.309451 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 19.90646 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 9.702494 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.753116 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.974319 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.836306 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35340 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12035, gene_20332 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005943 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g083180 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16935, Sbi_jg61467 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg211 |
| Amaranthaceae | Suaeda aralocaspica | 5 | GOSA_00013044, GOSA_00013048, GOSA_00013049, GOSA_00013050 ... |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24713, Sgl29866 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000009456, gene:ENSEOMG00000029843 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0007490, CQ.Regalona.r1.4AG0009500 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30171470 |
| Apiaceae | Apium graveolens | 1 | Ag10G02381 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723507 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G28399 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G26430.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001260m.g.v1.0, Thhalv10007728m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g23300.v2.2, Sp4g07260.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g032360.2N, BniB04g041430.2N, BniB04g041450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1868 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1944 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g04980 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0023s00043.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g07380 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1400, evm.TU.LG08.1035 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000964, Pov_00039618 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G28714, Lb6G29908 |
| Poaceae | Echinochloa crus-galli | 1 | CH02.2005 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0017350 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0619440.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009472, gene-QYE76_042856 |
| Poaceae | Oryza coarctata | 1 | Oco02G010940 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g27940.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G038200, gene-BS78_07G064800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303723 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G015440, Chr16G018190, Chr17G017410 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G585900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG049580, gene_TRIDC6BG058090 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G331500.1, TraesCS6B02G362300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb048550_P004, Zm00001eb307170_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21706 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10359 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.580, evm.TU.LG22.1369 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g11260 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1647 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26101 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9128 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4459 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.908 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000283 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2143 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9530 |
| Salicaceae | Populus euphratica | 2 | populus_peu06315, populus_peu20145 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132598692, gene-LOC132599557, gene-LOC132645204 |
| Solanaceae | Solanum chilense | 1 | SOLCI002882900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007733 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.28410_chr04_+, gene_8213 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G3537, TC02G3546 |
| Zosteraceae | Zostera marina | 1 | Zosma04g01170.v3.1 |