Basic Information
Locus ID:
Ag10G02379
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
prefoldin subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 226254309 | 226264242 | + | Ag10G02379 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 14,801.69 Da | 52.57 | 81.56 | -0.73 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G07340.1 | PREFOLDIN 1. | 0 |
| RefSeq | XP_017255260.1 | PREDICTED: prefoldin subunit 1 [Daucus carota subsp. sativus] | 0 |
| Q94AF7 | Prefoldin subunit 1 OS=Arabidopsis thaliana OX=3702 GN=PFD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2R6P4M5 | Prefoldin subunit like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc33216 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 66.366119 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 62.057373 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 67.33551 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 68.090309 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 62.702229 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 60.635906 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 49.237137 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 36.871429 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 67.160744 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 62.677074 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 61.760738 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 69.514008 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 63.931263 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 73.465492 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 65.174377 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 69.142616 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 85.488777 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 58.096245 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 66.915321 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 57.632256 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 57.775486 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 93.177261 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 91.664032 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 86.378136 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 83.329498 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 66.768143 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 69.57328 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 54.267483 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 72.991928 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 44.342392 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 39.549866 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 34.110382 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.372393 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 55.603195 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 23.198616 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 26.717161 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 30.899498 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 31.209471 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 43.89492 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 32.806244 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 33.828796 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 56.327137 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 66.152481 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 67.899353 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 76.34198 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 72.037285 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 78.1045 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 149.036774 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 149.850983 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 128.168137 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32819 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7983 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034068 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g035980 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20681, Sbi_jg23073 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16939 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009244 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63393, Sgl67873 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016954, gene:ENSEOMG00000017806 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0012310, CQ.Regalona.r1.2BG0013830 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30283870 |
| Apiaceae | Apium graveolens | 1 | Ag10G02379 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714095 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.48.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G16214 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G07340.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015026m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g13890.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g029060.2N, BniB08g017660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2667 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2801 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g06840 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0357s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g11400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.588 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039508 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31085 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.1680, BH07.1665, BH07.1686, CH07.1516 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0130260, gene-QOZ80_2BG0185500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0150100.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053662, gene-QYE76_056678 |
| Poaceae | Oryza coarctata | 2 | Oco03G009680, Oco04G010030 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g26440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G374800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601321, Pt_Chr0601348 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G011910, Chr09G016460, Chr13G013240, Chr15G013660 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G461500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG033860, gene_TRIDC2BG038570 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G247800.1, TraesCS2B02G269400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb240760_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19058, nbis-gene-21018 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13489, Zma_g16300 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.136, evm.TU.LG15.13 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g14520 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2346 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10486 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5085 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1381 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000790 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1798 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22375 |
| Salicaceae | Populus euphratica | 1 | populus_peu11241 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616728 |
| Solanaceae | Solanum chilense | 1 | SOLCI002499600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023970 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_18021 |
| Zosteraceae | Zostera marina | 1 | Zosma05g26800.v3.1 |