Basic Information
Locus ID:
Ag10G02361
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Translation factor GUF1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 225588238 | 225597884 | - | Ag10G02361 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 75,838.23 Da | 32.51 | 91.04 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03691 | BipA_TypA_II | 292 | 385 | 2.0103E-35 | - |
| CDD | cd16263 | BipA_III | 392 | 470 | 1.80557E-43 | - |
| CDD | cd01891 | TypA_BipA | 91 | 284 | 8.5581E-133 | - |
| CDD | cd03710 | BipA_TypA_C | 485 | 564 | 1.69856E-35 | IPR035651 |
| Pfam | PF00679 | Elongation factor G C-terminus | 483 | 568 | 3.3E-20 | IPR000640 |
| Pfam | PF00009 | Elongation factor Tu GTP binding domain | 91 | 282 | 8.9E-54 | IPR000795 |
| Pfam | PF03144 | Elongation factor Tu domain 2 | 306 | 375 | 1.7E-10 | IPR004161 |
| SUPERFAMILY | SSF54980 | EF-G C-terminal domain-like | 390 | 474 | 9.59E-13 | IPR035647 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 82 | 293 | 1.18E-54 | IPR027417 |
| SUPERFAMILY | SSF50447 | Translation proteins | 239 | 385 | 5.2E-29 | IPR009000 |
| SUPERFAMILY | SSF54980 | EF-G C-terminal domain-like | 485 | 600 | 6.71E-28 | IPR035647 |
| Gene3D | G3DSA:2.40.50.250 | bipa protein | 570 | 649 | 1.5E-114 | IPR042116 |
| Gene3D | G3DSA:3.40.50.300 | - | 89 | 285 | 2.7E-61 | IPR027417 |
| Gene3D | G3DSA:3.30.70.240 | - | 476 | 569 | 1.5E-114 | - |
| Gene3D | G3DSA:3.30.70.870 | Elongation Factor G (Translational Gtpase), domain 3 | 393 | 676 | 1.5E-114 | - |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 286 | 386 | 4.6E-26 | - |
| SMART | SM00838 | EFG_C_a | 482 | 571 | 7.7E-5 | IPR000640 |
| TIGRFAM | TIGR01394 | TypA_BipA: GTP-binding protein TypA/BipA | 92 | 680 | 2.6E-272 | IPR006298 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 92 | 241 | 1.8E-22 | IPR005225 |
| ProSiteProfiles | PS51722 | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 90 | 285 | 53.016968 | IPR000795 |
| ProSitePatterns | PS00301 | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 131 | 146 | - | IPR031157 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 158 | 168 | 3.3E-13 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 210 | 219 | 3.3E-13 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 94 | 107 | 3.3E-13 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 138 | 146 | 3.3E-13 | IPR000795 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13650.1 | elongation factor family protein. | 0 |
| RefSeq | XP_017258515.1 | PREDICTED: GTP-binding protein TypA/BipA homolog [Daucus carota subsp. sativus] | 0 |
| F4K410 | Putative elongation factor TypA-like SVR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SVR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161WU87 | Tr-type G domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020478 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 41.970242 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 43.362465 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 33.325729 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 38.808502 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 35.166733 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 44.143723 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 25.77096 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 24.435463 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 73.714523 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 70.02253 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 74.654114 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 62.388893 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 71.752151 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 59.447601 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 36.838383 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 35.69994 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 43.891552 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 97.828163 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 108.07692 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 83.548233 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 85.966492 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 28.429464 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 31.503475 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 32.721294 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 44.006351 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 115.96714 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 63.345173 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 131.904724 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 82.324028 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 126.826904 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 181.383102 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 148.289963 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 127.951141 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 57.910896 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 116.019646 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 130.475266 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 109.972382 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 122.38163 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 171.893723 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 248.968582 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 464.427124 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 36.439529 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 51.34317 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 86.958237 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 65.459099 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 43.938934 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 49.212696 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 27.083647 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.45849 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 28.227751 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15920 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4664 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021787 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59302, Sbi_jg63322 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23556 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018394 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02687, Sgl07844 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012880, gene:ENSEOMG00000029837 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0020930, CQ.Regalona.r1.3BG0021720 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30186830 |
| Apiaceae | Apium graveolens | 1 | Ag10G02361 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G012150 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704562 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1492.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G17070, Ftri12G12173 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G13650.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012883m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g30370.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g048910.2N, BniB05g024670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1080 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1227 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g04830 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0181s00024.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g06410 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2474 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006657 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16252 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.1272, AH07.1297, BH07.1356, CH07.1074 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0109660, gene-QOZ80_2BG0163450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0587920.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_022237 |
| Poaceae | Oryza coarctata | 1 | Oco03G007830 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g18450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G123000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201903 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G000590 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G405100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG028680, gene_TRIDC6BG036660 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G192800.1, TraesCS6B02G224800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb236900_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34092 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15323 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1221, evm.TU.LG21.821 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g09990 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1181 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6438 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2765 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4245 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.795 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016654 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10979 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13379 |
| Salicaceae | Populus euphratica | 1 | populus_peu10970 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636519 |
| Solanaceae | Solanum chilense | 1 | SOLCI005990500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014339 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4057 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2437 |
| Zosteraceae | Zostera marina | 2 | Zosma03g05350.v3.1, Zosma07g02630.v3.1 |