Basic Information
Locus ID:
Ag10G02355
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Leucine-rich repeat receptor-like tyrosine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 225399582 | 225402367 | + | Ag10G02355 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 97,274.98 Da | 31.75 | 110.34 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 132 | 154 | 0.045 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 61 | 119 | 2.6E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 21 | 55 | 8.6E-5 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 607 | 878 | 6.1E-26 | IPR001245 |
| SUPERFAMILY | SSF52047 | RNI-like | 171 | 484 | 4.87E-57 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 49 | 220 | 2.72E-35 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 604 | 880 | 2.73E-47 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 314 | 423 | 9.7E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 80 | 313 | 3.8E-68 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 683 | 886 | 4.2E-42 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 15 | 79 | 4.0E-7 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 574 | 682 | 2.4E-13 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 425 | 515 | 6.1E-24 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 443 | 466 | 43.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 82 | 105 | 3.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 106 | 129 | 86.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 130 | 153 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 346 | 370 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 202 | 226 | 77.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 604 | 886 | 25.983252 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 132 | 155 | 7.419328 | IPR001611 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 727 | 739 | - | IPR008266 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41820.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017242893.1 | PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 [Daucus carota subsp. sativus] | 0 |
| O22938 | Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 OS=Arabidopsis thaliana OX=3702 GN=PXC3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A165ZQL5 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009060 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.852158 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.851931 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.427717 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.410898 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.41409 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.386461 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.171534 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.325004 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.022684 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.32061 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.082253 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.363192 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.726707 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.032498 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.308889 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.32491 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.938639 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.668577 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.763249 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.892754 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.800911 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 22.512575 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 29.254551 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.8389 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 16.047089 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.537799 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 28.430187 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.394713 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 16.15938 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.193388 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.429815 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.541503 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.045681 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.450139 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.048493 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.033775 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.556504 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.651989 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.213705 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.008376 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.577372 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.155956 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.87155 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.962204 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 13.959991 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.393929 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15909, jg33258 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19046 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021809 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59319, Sbi_jg63302 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23575 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018383 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02702, Sgl07860 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012639, gene:ENSEOMG00000029738 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0021030, CQ.Regalona.r1.3BG0021850 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30186740 |
| Apiaceae | Apium graveolens | 2 | Ag10G02355, Ag4G01394 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G014890, COCNU_14G012240 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696298, gene-LOC120107000 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1487.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G11183 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G41820.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016216m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g24080.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g003900.2N, BniB06g001080.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1067 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1215 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g37780 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2489 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006672 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28910 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.573, BH03.682, CH03.778 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0560430, gene-QOZ80_7BG0591880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0245080.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042146 |
| Poaceae | Oryza coarctata | 2 | Oco13G003640, Oco14G004060 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g10630.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G075400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0303847, Pt_Chr0303856 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr19G016280, Chr24G003520, Chr28G002950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G244500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG018820, gene_TRIDC3BG023170 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G142200.1, TraesCS3B02G162500.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb095370_P002, Zm00001eb303060_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-26676 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6173 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.490, evm.TU.LG15.448 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g05130 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1172 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6448 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1727 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4252 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.803 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016432 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10987 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13370 |
| Salicaceae | Populus euphratica | 2 | populus_peu10957, populus_peu26105 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607490, gene-LOC132613777 |
| Solanaceae | Solanum chilense | 2 | SOLCI001902500, SOLCI004509000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002720, gene-LOC107018377 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.7523_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2452 |