Basic Information
Locus ID:
Ag10G02306
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 223157717 | 223158961 | - | Ag10G02306 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.56 | 23,242.45 Da | 55.18 | 67.75 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 144 | 207 | 2.27018E-17 | IPR002048 |
| CDD | cd00051 | EFh | 71 | 129 | 1.34618E-18 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 143 | 207 | 1.0E-8 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 70 | 129 | 1.4E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 67 | 207 | 2.51E-40 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 140 | 213 | 3.2E-20 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 49 | 139 | 5.3E-21 | - |
| SMART | SM00054 | efh_1 | 144 | 172 | 1.8E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 108 | 136 | 0.0015 | IPR002048 |
| SMART | SM00054 | efh_1 | 181 | 209 | 0.0018 | IPR002048 |
| SMART | SM00054 | efh_1 | 71 | 99 | 7.1E-7 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 71 | 102 | 13.843916 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 177 | 212 | 11.556493 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 140 | 175 | 14.318138 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 104 | 139 | 12.142296 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 80 | 92 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 153 | 165 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 190 | 202 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 117 | 129 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41410.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_017254670.1 | PREDICTED: probable calcium-binding protein CML35 [Daucus carota subsp. sativus] | 0 |
| P30188 | Probable calcium-binding protein CML35 OS=Arabidopsis thaliana OX=3702 GN=CML35 PE=2 SV=2 | 0 | |
| TrEMBL | A0A164WQ27 | Calcium-binding protein CML36 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 89.999603 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 119.734856 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 110.258461 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 118.513763 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 120.450058 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 81.856064 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 69.633095 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 45.008942 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 310.234955 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 281.270935 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 243.451477 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 159.930695 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 266.094696 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 238.107925 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 161.535492 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 165.828491 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 117.838577 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 220.912262 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 242.745071 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 252.777359 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 258.416443 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 231.114594 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 238.401337 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 254.518967 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 270.514496 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 119.721466 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 124.748726 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 143.971695 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 138.798889 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 100.426506 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 74.420349 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 90.833084 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 173.118713 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 138.319427 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 210.678772 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 114.708221 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 88.268974 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 105.034401 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 44.013557 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 67.017487 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 59.965057 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 296.957336 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 464.428528 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 227.122406 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 196.851593 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 269.788147 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 282.090363 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 435.081696 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 92.136528 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 101.424072 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology