Basic Information
Locus ID:
Ag10G02265
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Tetratricopeptide repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 221350970 | 221356365 | - | Ag10G02265 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.37 | 49,793.37 Da | 43.20 | 79.25 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48452 | TPR-like | 54 | 306 | 3.04E-13 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 179 | 363 | 1.9E-10 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 43 | 136 | 3.8E-7 | IPR011990 |
| SMART | SM00028 | tpr_5 | 59 | 92 | 0.15 | IPR019734 |
| SMART | SM00028 | tpr_5 | 228 | 261 | 18.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 270 | 303 | 78.0 | IPR019734 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 172 | - | - |
| Coils | Coil | Coil | 337 | 364 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37210.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_017219849.1 | PREDICTED: NASP-related protein sim3 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164U972 | SHNi-TPR domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025670 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 33.012646 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 24.927603 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 25.70738 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 26.207253 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 26.08444 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 26.173592 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 22.175108 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.692775 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 72.091835 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 72.725853 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 75.105904 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 78.042618 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 67.699463 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 66.659149 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 26.727903 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 32.48711 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 30.920168 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 30.42609 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 25.293514 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 27.973553 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 31.220772 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 48.616486 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 47.417885 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 48.821888 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 47.316082 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 32.368282 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 30.679018 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 30.00905 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 34.306545 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 19.779535 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 16.017937 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 16.825974 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 25.861786 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 51.882259 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 25.56299 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 27.333872 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 21.029739 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 23.409941 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.043785 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.378403 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.841051 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.92967 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 21.948595 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 51.964619 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 36.038506 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 28.277748 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 29.883827 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 58.518093 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 48.65377 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 56.281647 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19706 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24200 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026656 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g138320 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg51528, Sbi_jg5839 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13599 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013478 |
| Amaranthaceae | Suaeda glauca | 19 | Sgl02475, Sgl07628, Sgl12645, Sgl12661, Sgl13877, Sgl15191 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001794, gene:ENSEOMG00000004090 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0018430, CQ.Regalona.r1.6BG0019570 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30207180 |
| Apiaceae | Apium graveolens | 1 | Ag10G02265 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G017920, COCNU_14G009970 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709173, gene-LOC103721178 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.1487.V1.1, AsparagusV1_08.1705.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G27781, Ftri1G14830 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G37210.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025057m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g34580.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g014040.2N, BniB05g001920.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1669 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1711 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g07750 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0180s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g03450, gene.Thate05g16950, gene.Thate08g21070 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10533, nbisL1-mrna-7064 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2235 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024030 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G05957, Lb7G35133, Lb7G35138 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.1836, AH03.121, BH01.2150, BH03.134, BH04.1784 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0553930, gene-QOZ80_7BG0584980 |
| Poaceae | Hordeum vulgare | 6 | HORVU.MOREX.r3.2HG0155210.1, HORVU.MOREX.r3.5HG0528360.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_041900, gene-QYE76_044929, gene-QYE76_060536 |
| Poaceae | Oryza coarctata | 2 | Oco13G000760, Oco14G000830 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g03070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G018500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0301938, Pt_Chr0302198, Pt_Chr0303398, Pt_Chr0604114 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr07G023250, Chr08G008080, Chr19G018530, Chr23G007570 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G473000, Tel2E01G627700, Tel5E01G781500 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG037770, gene_TRIDC2BG040210 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2D02G258500.2, TraesCS4A02G366600.1 ... |
| Poaceae | Zea mays | 10 | Zm00001eb117930_P001, Zm00001eb130830_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-35852, nbis-gene-50416 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g4695, Zma_g5912 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.237, evm.TU.LG25.1076 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g14070 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.300, evm.TU.Scaffold_6_RagTag.1946 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-327, nbisL1-mrna-547 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-12367, nbisL1-mrna-16524, nbisL1-mrna-3134 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11845, nbisL1-mrna-11846, nbisL1-mrna-6030 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000011l.492, evm.TU.utg000019l.1064 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012779 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15552, nbisL1-mrna-6467 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3153 |
| Salicaceae | Populus euphratica | 3 | populus_peu14274, populus_peu14275, populus_peu23488 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621697 |
| Solanaceae | Solanum chilense | 1 | SOLCI003384500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011759 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.8784_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0514 |
| Zosteraceae | Zostera marina | 1 | Zosma01g30970.v3.1 |