Basic Information
Locus ID:
Ag10G02264
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 221340038 | 221343324 | - | Ag10G02264 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 70,298.80 Da | 56.59 | 80.44 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 20 | 151 | 4.2E-7 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 223 | 481 | 2.6E-84 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 10 | 148 | 3.92E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 11 | 176 | 1.3E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 21 | 152 | 6.3E-8 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 21 | 116 | 10.033815 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 222 | 505 | 87.824188 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 71 | - | - |
| Coils | Coil | Coil | 543 | 570 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66560.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_017219720.1 | PREDICTED: BTB/POZ domain-containing protein At5g66560 [Daucus carota subsp. sativus] | 0 |
| Q94A73 | BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana OX=3702 GN=At5g66560 PE=2 SV=2 | 0 | |
| TrEMBL | A0A164U968 | NPH3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025669 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.247653 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.496687 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.96259 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.341016 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.435472 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.385877 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.502212 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.416979 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.142132 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.687555 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 20.499258 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 15.296126 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.161879 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.986376 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.952271 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.139868 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.296982 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 10.52986 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.267449 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.173542 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.242781 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.104172 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.806982 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.030048 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.080024 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.229074 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.316867 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.198017 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.480134 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.958183 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.040998 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.325732 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.904893 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.509137 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.135689 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.714213 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.810604 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.649696 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.532035 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.552131 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.838598 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.650822 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 9.094882 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.919414 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.672219 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.41884 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.97206 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.714047 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.53269 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.494431 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17489, jg40101 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24202 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026655 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g138290 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg51506, Sbi_jg5844 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13606 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013477 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34697, Sgl40108 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000189, gene:ENSEOMG00000003367 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0018420, CQ.Regalona.r1.6BG0019560 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30207200 |
| Apiaceae | Apium graveolens | 1 | Ag10G02264 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G017940, COCNU_13G008380 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696928, gene-LOC103709194 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.828.V1.1, AsparagusV1_03.829.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G25732, Ftri1G09555 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G50840.1, AT5G66560.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003788m.g.v1.0, Thhalv10010316m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g30150.v2.2, Sp5g11380.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g015560.2N, BniB08g064750.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1671 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1712 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g00330 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g30570, gene.Thate06g13460 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10532, nbisL1-mrna-7063 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2237 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024031 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36134 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.26, BH01.607, BH01.808, CH01.588, CH01.807 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0214550, gene-QOZ80_3AG0216940 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0509260.1, HORVU.MOREX.r3.5HG0513170.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_061612, gene-QYE76_061998 |
| Poaceae | Oryza coarctata | 4 | Oco05G023080, Oco05G024580, Oco06G023960, Oco06G025520 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g52880.1, LOC_Os03g55830.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G068300, gene-BS78_01G087500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0107082, Pt_Chr0107391, Pt_Chr0107521, Pt_Ctg00193 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G004220, Chr01G005740, Chr04G029440, Chr07G028520 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G603600, Tel5E01G637900 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC4AG035740, gene_TRIDC5AG055490 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1B02G298700.1, TraesCS2D02G507400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb056580_P002, Zm00001eb213970_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15014, nbis-gene-16303 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2698, Zma_g516 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1419, evm.TU.LG05.236, evm.TU.LG12.68 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g28220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1947 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17189 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16527, nbisL1-mrna-3135 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11844 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1186 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006928 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15553 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3152 |
| Salicaceae | Populus euphratica | 2 | populus_peu14277, populus_peu23490 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622312 |
| Solanaceae | Solanum chilense | 1 | SOLCI003384300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011764 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.4788_chr03_-, gene_2801 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2138, TC11G0516 |
| Zosteraceae | Zostera marina | 1 | Zosma04g07340.v3.1 |