Basic Information
Locus ID:
Ag10G02246
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 220483448 | 220485732 | - | Ag10G02246 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 44,307.79 Da | 42.28 | 88.00 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 79 | 123 | 1.0E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 76 | 154 | 6.54E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 67 | 153 | 6.6E-8 | - |
| SMART | SM00256 | fbox_2 | 83 | 123 | 2.7E-8 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 77 | 123 | 12.385359 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26850.1 | F-box family protein. | 0 |
| RefSeq | XP_017255975.1 | PREDICTED: F-box protein At2g26850-like [Daucus carota subsp. sativus] | 0 |
| Q6NLB1 | F-box protein At2g26850 OS=Arabidopsis thaliana OX=3702 GN=At2g26850 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161WTZ0 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020578 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.004709 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.229665 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.876075 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.741261 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.696352 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.260905 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.528269 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.990465 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 46.49332 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 50.745113 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 52.695286 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 40.369045 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 51.615334 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 50.154064 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 39.424595 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 34.826653 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 53.607594 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.026686 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.63531 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.778097 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.755687 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.043471 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.024351 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.840659 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.749976 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 27.061377 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 29.942705 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.631935 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 31.409803 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.337847 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.329348 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.145428 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.017041 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.313491 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.70979 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.558526 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.12434 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.823373 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 21.518219 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.054461 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.594783 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.442691 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.873092 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.646783 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.970845 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.88462 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.53303 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 44.17215 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 29.788357 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 44.135464 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg15823, jg16356, jg33215, jg37689 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10175, gene_4575 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah005092, Ah022178 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g063050, BVRB_4g073890 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17769, Sbi_jg62427 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1003 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007228 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23929, Sgl29108 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011594, gene:ENSEOMG00000013620 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0023050, CQ.Regalona.r1.3BG0023750 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30167160, pistato.v30189880 |
| Apiaceae | Apium graveolens | 4 | Ag10G02246, Ag2G01541, Ag3G02809, Ag9G01470 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G016680, COCNU_04G006230 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710333, gene-LOC103713284 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.1965.V1.1, AsparagusV1_07.1724.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G02806, Ftri13G08787, Ftri17G10868 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G26850.1, AT2G32560.1, AT2G41170.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007953m.g.v1.0, Thhalv10016802m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g10550.v2.2, Sp4g23470.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g004290.2N, BniB02g006650.2N, BniB06g000490.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G0891, Ceq05G1593 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1013, Cgl05G1591 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g13270, gene.Cymno05g14400 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g09540, gene.Thate07g10560 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-400 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2633, evm.TU.LG09.97 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000036, Pov_00017176 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G07480, Lb3G16151, Lb3G19259 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.1302, AH02.3613, BH02.1350, BH02.3342, CH02.1461 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0003380, gene-QOZ80_1AG0037060 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0258890.1, HORVU.MOREX.r3.3HG0295610.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_052575, gene-QYE76_055903 |
| Poaceae | Oryza coarctata | 4 | Oco01G008120, Oco01G022690, Oco02G008410, Oco02G023420 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g17390.1, LOC_Os01g59180.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G123000, gene-BS78_03G310500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0601768, Pt_Chr0603706, Pt_Chr0605525, Pt_Ctg00248 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G006920, Chr02G027370, Chr05G005120, Chr05G026510 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G328600, Tel3E01G532700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG026850, gene_TRIDC3AG047970 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G192000.1, TraesCS3A02G333500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb129100_P001, Zm00001eb150400_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-24452, nbis-gene-32561 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g7309, Zma_g8835, Zma_g9643 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG07.381, evm.TU.LG08.1419, evm.TU.LG15.565 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g30190, gene.Posoc02g06950 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_12_RagTag.459, evm.TU.Scaffold_13_RagTag.610 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-10149, nbisL1-mrna-24290, nbisL1-mrna-30458 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-12924, nbisL1-mrna-17368, nbisL1-mrna-19302 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-13544, nbisL1-mrna-15992, nbisL1-mrna-17815 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000002l.101, evm.TU.utg000015l.337 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00011776, Maker00015244, Maker00017973 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-13207, nbisL1-mrna-4258, nbisL1-mrna-5698 |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-11415, nbisL1-mrna-11941, nbisL1-mrna-12306 ... |
| Salicaceae | Populus euphratica | 4 | populus_peu01803, populus_peu10844, populus_peu36017 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607564, gene-LOC132643641 |
| Solanaceae | Solanum chilense | 1 | SOLCI003347100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004786, gene-LOC107032251 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.21133_chr08_-, STRG.27961_chr04_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2938, TC12G1983 |
| Zosteraceae | Zostera marina | 2 | Zosma02g23980.v3.1, Zosma04g25220.v3.1 |