Basic Information
Locus ID:
Ag10G02244
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ubiquitin-associated domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 220439900 | 220447660 | - | Ag10G02244 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.78 | 32,788.67 Da | 41.89 | 100.17 | 0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00627 | UBA/TS-N domain | 253 | 288 | 1.6E-10 | IPR015940 |
| SUPERFAMILY | SSF144091 | Rhomboid-like | 8 | 194 | 4.05E-13 | IPR035952 |
| SUPERFAMILY | SSF46934 | UBA-like | 246 | 292 | 4.57E-12 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 230 | 294 | 2.2E-13 | - |
| Gene3D | G3DSA:1.20.1540.10 | - | 9 | 188 | 3.0E-5 | IPR035952 |
| SMART | SM00165 | uba_6 | 253 | 290 | 9.2E-9 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 251 | 291 | 14.1614 | IPR015940 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56740.1 | Ubiquitin-associated (UBA) protein. | 0 |
| RefSeq | XP_017215023.1 | PREDICTED: rhomboid-like protein 20 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9LET3 | Rhomboid-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=RBL20 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7A4C9 | Putative ubiquitin-associated domain-containing protein 2 (Fragment) OS=Davidia involucrata OX=16924 GN=Din_020149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.61945 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 19.812092 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 22.780996 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 24.428726 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 23.569075 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 26.394289 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 21.566921 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 22.574921 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.679203 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 26.513044 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 30.76582 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 32.812584 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 31.768473 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.663139 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 40.338509 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 38.39444 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 36.194927 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 30.842871 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 26.293112 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 35.982048 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 35.812248 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 40.122532 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 42.673153 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 39.985775 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 34.307411 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 32.084118 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 35.242401 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 24.886501 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 33.70953 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 17.155966 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 19.167936 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.846986 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 27.631128 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 27.328077 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 34.974342 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 22.205435 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 16.065619 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 19.996222 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 20.811951 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 16.785685 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.459794 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 59.940498 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 39.280659 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.710035 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 33.7616 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 74.658257 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 29.637804 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 32.024826 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 29.903006 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 29.507456 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15822, jg3802 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4574 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022179 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g063060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg58875, Sbi_jg63734 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23157 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012994 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02277, Sgl07425 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014447, gene:ENSEOMG00000031198 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0023060, CQ.Regalona.r1.3BG0023760 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30189870 |
| Apiaceae | Apium graveolens | 1 | Ag10G02244 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G016670, COCNU_04G006240 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710331, gene-LOC103713282 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1964.V1.1, AsparagusV1_07.1725.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G24282 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G41160.1, AT3G56740.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006131m.g.v1.0, Thhalv10017035m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g23460.v2.2, Sp5g05830.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g000480.2N, BniB08g071340.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0890 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1012 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g02640, gene.Cymno04g13310 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0149s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g35240, gene.Thate07g10550 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2634 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00017627 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07320 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.3612, AH02.880, BH02.1249, BH02.3343, CH02.1374 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0004300, gene-QOZ80_1AG0037050 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0256100.1, HORVU.MOREX.r3.3HG0295590.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016947, gene-QYE76_055907 |
| Poaceae | Oryza coarctata | 4 | Oco01G007520, Oco01G022680, Oco02G007820, Oco02G023410 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g16330.1, LOC_Os01g59160.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G114700, gene-BS78_03G310400 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0601766, Pt_Chr0603792, Pt_Chr0603872, Pt_Chr0605522 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G006930, Chr02G026830, Chr03G018300, Chr05G004550 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G320400, Tel3E01G532500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG025770, gene_TRIDC3AG047960 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G185300.1, TraesCS3A02G333400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb128690_P001, Zm00001eb150410_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-24508, nbis-gene-31367, nbis-gene-32507 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11367, Zma_g7358, Zma_g9685 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.380, evm.TU.LG13.1330, evm.TU.LG15.566 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g06960 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1615, evm.TU.Scaffold_8_RagTag.188 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10148 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10412, nbisL1-mrna-19301 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13543, nbisL1-mrna-17816 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.102, evm.TU.utg000018l.875 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003712, Maker00011921 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13206, nbisL1-mrna-3128 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11414, nbisL1-mrna-12305 |
| Salicaceae | Populus euphratica | 4 | populus_peu10845, populus_peu26279, populus_peu26280 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607342 |
| Solanaceae | Solanum chilense | 1 | SOLCI001149500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002596 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21132_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1984 |
| Zosteraceae | Zostera marina | 1 | Zosma04g25230.v3.1 |