Basic Information
Locus ID:
Ag10G02243
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 220434841 | 220439127 | + | Ag10G02243 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 45,233.54 Da | 40.53 | 85.36 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.40.50.11350 | - | 221 | 368 | 3.4E-6 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56750.1 | 0 | |
| RefSeq | XP_017254834.1 | PREDICTED: uncharacterized protein LOC108224660 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164WP61 | O-fucosyltransferase family protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020580 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.374494 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.975916 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.361479 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.884415 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.239321 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.21072 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.281527 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.310912 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.127008 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.409487 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 27.50522 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 25.946924 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.29598 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.93502 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 20.212618 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.891253 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 25.996569 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 17.719254 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.106014 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.029701 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.25613 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.728582 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.783625 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.96649 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 19.736418 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.901091 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.866564 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.218483 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.027477 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.04697 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.126311 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.594847 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.000461 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.688325 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.585254 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.334654 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.031708 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.886407 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.504406 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.952647 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.65011 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.319177 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.517309 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 8.910643 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.381952 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.729689 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.411594 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 20.641651 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.859247 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 19.413141 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15820 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18979 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038245 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g063150 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg63726 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012980 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02289, Sgl07437 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000013429, gene:ENSEOMG00000044234 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0023150, CQ.Regalona.r1.3BG0023870 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30189850 |
| Apiaceae | Apium graveolens | 1 | Ag10G02243 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G016640 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715825, gene-LOC120105846 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.1963.V1.1, AsparagusV1_04.260.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G33873 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G41150.2, AT3G56750.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006019m.g.v1.0, Thhalv10016761m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g05820.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g028490.2N, BniB06g000470.2N, BniB06g056210.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0888 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1010 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g02540 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g10540 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6052 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2636 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00017629 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07318 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3534, AH03.3855, BH01.3889, BH03.4138, CH01.4150 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0249410, gene-QOZ80_3BG0278800 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0119960.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_039304, gene-QYE76_067639, gene-QYE76_067689 |
| Poaceae | Oryza coarctata | 3 | Oco05G014220, Oco06G012080, Oco13G014020 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g25110.1, LOC_Os07g44700.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G345300, gene-BS78_02G367400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102782, Pt_Chr0304864 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G035270, Chr04G012000, Chr12G004330, Chr24G013870 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G297300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG018320, gene_TRIDC2BG022230 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G146500.1, TraesCS2B02G171800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb017860_P002, Zm00001eb109900_P003 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-1489, nbis-gene-33108 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1150, Zma_g5665 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1331, evm.TU.LG21.995 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g06970 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1613 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10410 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13540, nbisL1-mrna-13541 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.103 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011926 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13204 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12303 |
| Salicaceae | Populus euphratica | 3 | populus_peu10848, populus_peu26282, populus_peu37763 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607563 |
| Solanaceae | Solanum chilense | 1 | SOLCI003347200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032177 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21130_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1986 |
| Zosteraceae | Zostera marina | 2 | Zosma01g33150.v3.1, Zosma04g25240.v3.1 |