halophFGD

Basic Information

Locus ID: Ag10G02242

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: CRK1

Description: CDPK-related kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	220420380	220427088	+	Ag10G02242

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.34	64,629.27 Da	45.89	88.97	-0.24

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd05117	STKc_CAMK	127	389	1.73975E-129	-
Pfam	PF00069	Protein kinase domain	128	390	3.1E-71	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	125	429	6.47E-84	IPR011009
SUPERFAMILY	SSF47473	EF-hand	419	572	1.93E-16	IPR011992
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	121	217	3.5E-23	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	218	405	3.5E-61	-
Gene3D	G3DSA:1.10.238.10	-	409	572	3.3E-15	-
SMART	SM00220	serkin_6	128	390	1.8E-98	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	128	390	50.208927	IPR000719
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	432	467	8.23694	IPR002048
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	134	160	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	252	264	-	IPR008271
MobiDBLite	mobidb-lite	consensus disorder prediction	1	21	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005509 (calcium ion binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K00924 (receptor protein kinase TMK [EC:2.7.11.1])

Best hit

Source	Best Hit ID	Description
TAIR	AT2G41140.1	CDPK-related kinase 1. Encodes CDPK-related kinase 1 (CRK1).
RefSeq	XP_017258533.1	PREDICTED: CDPK-related kinase 7-like [Daucus carota subsp. sativus]
Swiss-Prot	O80673	CDPK-related kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRK1 PE=1 SV=1
TrEMBL	A0A164WP49	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020581 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	17.846308	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	17.674051	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	20.876928	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	22.575102	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	22.011696	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	16.857464	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	21.680653	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	14.62309	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	71.598175	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	72.58625	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	77.020226	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	68.118416	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	65.156418	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	54.010906	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	27.233477	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	39.626644	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	49.176895	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	54.541599	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	48.771709	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	70.070129	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	57.835331	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	126.501511	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	130.463226	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	146.048126	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	120.239037	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	85.426819	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	67.21344	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	59.82066	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	78.068253	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	12.789758		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	20.606411		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	19.020321		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	50.027969		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	51.77639		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	42.245842		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	14.522385		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	10.408167		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	12.809038		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	46.087734	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	42.542618	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	21.638447	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	38.372589	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	34.737278	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	35.476505	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	55.186619	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	39.602554	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	52.144291	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	59.628773	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	79.63195	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	82.152809	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg1056, jg15819, jg17458, jg19694, jg30644, jg31384, jg33213 ... jg40062
Aizoaceae	Mesembryanthemum crystallinum	3	gene_18978, gene_21574, gene_23920
Amaranthaceae	Atriplex hortensis	2	Ah022192, Ah027381
Amaranthaceae	Beta vulgaris	2	BVRB_3g063140, BVRB_6g134440
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg12980, Sbi_jg52890, Sbi_jg58887
Amaranthaceae	Salicornia europaea	2	Seu_jg23168, Seu_jg8973
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00010260, GOSA_00012981
Amaranthaceae	Suaeda glauca	4	Sgl02288, Sgl07436, Sgl33979, Sgl39375
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000001519, gene:ENSEOMG00000003269 ... gene:ENSEOMG00000015012, gene:ENSEOMG00000029011, gene:ENSEOMG00000032552, gene:ENSEOMG00000042180
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0023140, CQ.Regalona.r1.3BG0023860 ... CQ.Regalona.r1.6AG0024780, CQ.Regalona.r1.6BG0026190
Anacardiaceae	Pistacia vera	4	pistato.v30112190, pistato.v30113130, pistato.v30189840 ... pistato.v30206710
Apiaceae	Apium graveolens	3	Ag10G02242, Ag5G00266, Ag9G00150
Arecaceae	Cocos nucifera	4	COCNU_01G016230, COCNU_03G007540, COCNU_04G006270 ... COCNU_16G000320
Arecaceae	Phoenix dactylifera	4	gene-LOC103697758, gene-LOC103710986, gene-LOC103713280 ... gene-LOC120110259
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.1960.V1.1, AsparagusV1_03.1909.V1.1 ... AsparagusV1_Unassigned.802.V1.1
Asteraceae	Flaveria trinervia	7	Ftri11G12725, Ftri12G25941, Ftri13G29249, Ftri17G22730 ... Ftri18G13151, Ftri1G25536, Ftri3G33953
Brassicaceae	Arabidopsis thaliana	5	AT1G49580.1, AT2G41140.1, AT3G19100.1, AT3G50530.2 ... AT3G56760.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10005861m.g.v1.0, Thhalv10010211m.g.v1.0 ... Thhalv10011327m.g.v1.0, Thhalv10016437m.g.v1.0, Thhalv10020326m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g36450.v2.2, Sp3g17180.v2.2, Sp4g23450.v2.2 ... Sp5g05810.v2.2, Sp5g11670.v2.2
Brassicaceae	Brassica nigra	10	BniB01g004300.2N, BniB01g045200.2N, BniB05g047040.2N ... BniB06g000460.2N, BniB06g064200.2N, BniB07g006130.2N, BniB07g030380.2N, BniB07g051450.2N, BniB08g026760.2N, BniB08g064430.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G0887, Ceq05G1286, Ceq07G2012
Casuarinaceae	Casuarina glauca	3	Cgl04G1009, Cgl05G1290, Cgl07G2192
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno02g02250, gene.Cymno03g02550, gene.Cymno03g12440 ... gene.Cymno04g09370, gene.Cymno05g14420
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g09570, gene.Thate05g11480, gene.Thate07g10530
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-10028
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2637, evm.TU.LG02.2178, evm.TU.LG08.28
Plantaginaceae	Plantago ovata	4	Pov_00000043, Pov_00017645, Pov_00023959, Pov_00029279
Plumbaginaceae	Limonium bicolor	5	Lb1G05824, Lb1G07317, Lb3G17166, Lb7G33265, Lb8G35819
Poaceae	Echinochloa crus-galli	9	AH01.3535, AH03.3720, AH03.3862, BH01.3890, BH03.4001 ... BH03.4148, CH01.4151, CH03.4271, CH07.369
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_3AG0249390, gene-QOZ80_3BG0278820 ... gene-QOZ80_7AG0577510, gene-QOZ80_7AG0579190, gene-QOZ80_7BG0608850, gene-QOZ80_7BG0610430
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0119920.1, HORVU.MOREX.r3.2HG0124380.1
Poaceae	Lolium multiflorum	5	gene-QYE76_039303, gene-QYE76_039467, gene-QYE76_039712 ... gene-QYE76_067641, gene-QYE76_067691
Poaceae	Oryza coarctata	6	Oco05G014200, Oco06G012100, Oco13G012890, Oco13G014030 ... Oco14G013590, Oco14G014860
Poaceae	Oryza sativa	3	LOC_Os03g25070.1, LOC_Os07g42770.1, LOC_Os07g44710.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G345500, gene-BS78_02G352800 ... gene-BS78_02G368400
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0102783, Pt_Chr0205040, Pt_Chr0205045, Pt_Chr0304865
Poaceae	Sporobolus alterniflorus	10	Chr01G035250, Chr04G011980, Chr07G011290, Chr12G004350 ... Chr19G001310, Chr24G013850, Chr24G015090, Chr27G016030, Chr28G011870, Chr28G012890
Poaceae	Thinopyrum elongatum	2	Tel2E01G296900, Tel2E01G326400
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG018270, gene_TRIDC2AG021010 ... gene_TRIDC2BG022190, gene_TRIDC2BG024910
Poaceae	Triticum aestivum	6	TraesCS2A02G146200.2, TraesCS2A02G165800.1 ... TraesCS2B02G171600.1, TraesCS2B02G191800.1, TraesCS2D02G150800.1, TraesCS2D02G173100.1
Poaceae	Zea mays	6	Zm00001eb017850_P001, Zm00001eb109500_P002 ... Zm00001eb110250_P001, Zm00001eb327690_P001, Zm00001eb328990_P001, Zm00001eb394250_P002
Poaceae	Zoysia japonica	4	nbis-gene-245, nbis-gene-33109, nbis-gene-350 ... nbis-gene-49983
Poaceae	Zoysia macrostachya	5	Zma_g3586, Zma_g5569, Zma_g5666, Zma_g6871, Zma_g6953
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.438, evm.TU.LG05.592, evm.TU.LG07.378 ... evm.TU.LG09.1683, evm.TU.LG15.568, evm.TU.LG25.735
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g22450, gene.Posoc01g30240, gene.Posoc02g06990 ... gene.Posoc02g30240
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_1_RagTag.2121, evm.TU.Scaffold_3_RagTag.342 ... evm.TU.Scaffold_6_RagTag.1901, evm.TU.Scaffold_7_RagTag.1612, evm.TU.Scaffold_8_RagTag.190
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-10144, nbisL1-mrna-17238, nbisL1-mrna-586 ... nbisL1-mrna-5931, nbisL1-mrna-671
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-10409, nbisL1-mrna-11841, nbisL1-mrna-16947 ... nbisL1-mrna-17116, nbisL1-mrna-19299
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-11884, nbisL1-mrna-13539, nbisL1-mrna-17818 ... nbisL1-mrna-3413, nbisL1-mrna-6054
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000002l.104, evm.TU.utg000016l.193 ... evm.TU.utg000018l.873, evm.TU.utg000019l.1044
Rhizophoraceae	Kandelia obovata	5	Maker00003593, Maker00008094, Maker00011795, Maker00012595 ... Maker00017256
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-13203, nbisL1-mrna-15522, nbisL1-mrna-3132 ... nbisL1-mrna-4753, nbisL1-mrna-6446
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-11410, nbisL1-mrna-12302, nbisL1-mrna-14056 ... nbisL1-mrna-2250, nbisL1-mrna-3191
Salicaceae	Populus euphratica	7	populus_peu08976, populus_peu10849, populus_peu14322 ... populus_peu14331, populus_peu23422, populus_peu26283, populus_peu37581
Solanaceae	Lycium barbarum	4	gene-LOC132599061, gene-LOC132607565, gene-LOC132622656 ... gene-LOC132622876
Solanaceae	Solanum chilense	4	SOLCI003347300, SOLCI004215100, SOLCI006612500 ... SOLCI006618900
Solanaceae	Solanum pennellii	4	gene-LOC107002348, gene-LOC107008064, gene-LOC107011883 ... gene-LOC107020392
Tamaricaceae	Reaumuria soongarica	4	gene_11449, gene_16814, gene_3425, gene_3833
Tamaricaceae	Tamarix chinensis	4	TC04G1696, TC11G0498, TC12G1101, TC12G1987
Zosteraceae	Zostera marina	3	Zosma01g33080.v3.1, Zosma04g20030.v3.1, Zosma06g21820.v3.1