Basic Information
Locus ID:
Ag10G02241
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
26S proteasome non-ATPase regulatory subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 220369267 | 220374213 | + | Ag10G02241 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 34,558.36 Da | 37.93 | 92.07 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08069 | MPN_RPN11_CSN5 | 21 | 286 | 1.04499E-155 | - |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 27 | 138 | 2.3E-32 | IPR000555 |
| Pfam | PF13012 | Maintenance of mitochondrial structure and function | 173 | 294 | 1.6E-13 | IPR024969 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 31 | 168 | 1.7E-19 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 18 | 234 | 5.2E-81 | - |
| SMART | SM00232 | pad1_6 | 30 | 165 | 1.1E-48 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 31 | 166 | 36.302238 | IPR037518 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23540.1 | Mov34/MPN/PAD-1 family protein. | 0 |
| RefSeq | XP_017215022.1 | PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Daucus carota subsp. sativus] | 0 |
| Q9LT08 | 26S proteasome non-ATPase regulatory subunit 14 homolog OS=Arabidopsis thaliana OX=3702 GN=RPN11 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164WP40 | MPN domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020582 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 79.084862 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 54.092892 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 44.067856 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 48.039364 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 56.60918 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 38.704956 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 38.264565 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 24.643024 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 88.652977 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 84.331963 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 87.887978 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 100.272766 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 98.750854 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 112.91613 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 80.62114 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 105.943634 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 84.553963 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 75.090698 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 68.833862 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 98.823616 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 92.373108 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 91.683128 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 96.478889 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 120.16671 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 92.882256 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 65.958519 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 76.524132 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 63.475868 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 77.30677 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 29.97629 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 22.243156 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 21.643398 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 44.01543 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 71.136742 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 44.84211 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 38.129154 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 32.607952 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 36.397396 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 54.577282 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 32.681484 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 40.214817 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 315.118286 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 276.515564 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 59.447376 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 52.759701 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 305.753784 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 57.599285 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 127.88549 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 139.149094 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 111.287605 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11957, jg22788 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14001 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016369 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg24873, Sbi_jg32558, Sbi_jg8732 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg10824, Seu_jg19867, Seu_jg7452 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015584 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl03874, Sgl04959, Sgl10010, Sgl44899, Sgl45062, Sgl49662 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010997, gene:ENSEOMG00000030544 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0016260 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30044310, pistato.v30045520 |
| Apiaceae | Apium graveolens | 2 | Ag10G02241, Ag4G02789 |
| Arecaceae | Cocos nucifera | 3 | COCNU_04G001160, COCNU_04G015880, COCNU_16G008540 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704111, gene-LOC103722542, gene-LOC103722649 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.276.V1.1, AsparagusV1_07.108.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G27343, Ftri1G10890, Ftri9G14897 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G23540.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004651m.g.v1.0, Thhalv10008281m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g23650.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g076710.2N, BniB04g003230.2N, BniB07g040660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1088 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1181 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g02700 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1103s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g12710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1276 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.459, evm.TU.LG06.460 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00002369, Pov_00013026, Pov_00027653, Pov_00036626 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20865 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.898, AH05.2430, BH02.1231, BH05.2526, CH02.1357 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0004450, gene-QOZ80_1AG0032370 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0059930.1, HORVU.MOREX.r3.3HG0255730.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013876, gene-QYE76_018299, gene-QYE76_052340 |
| Poaceae | Oryza coarctata | 6 | Oco01G007420, Oco02G007700, Oco09G007920, Oco10G008170 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os01g16190.1, LOC_Os05g30800.1, LOC_Os06g49020.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G113100, gene-BS78_09G146300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0401114, Pt_Chr0505271, Pt_Chr0505320 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr03G001480, Chr08G003620, Chr18G009440, Chr20G008800 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G390400, Tel3E01G318600, Tel7E01G699400 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1AG035720, gene_TRIDC3AG025520 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G237100.2, TraesCS1D02G235300.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb128130_P001, Zm00001eb197860_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-13942, nbis-gene-24517, nbis-gene-44771 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g22753, Zma_g27195, Zma_g9691 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2783, evm.TU.LG02.212, evm.TU.LG09.1453 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g00490, gene.Posoc04g04950 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.936 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8855 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8922 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20648 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.292 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003759 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11434 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17156, nbisL1-mrna-25098 |
| Salicaceae | Populus euphratica | 1 | populus_peu31966 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627884 |
| Solanaceae | Solanum chilense | 1 | SOLCI002880700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018080 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7350 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2943, TC10G2164 |
| Zosteraceae | Zostera marina | 1 | Zosma06g07270.v3.1 |