Basic Information
Locus ID:
Ag10G02228
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Autophagy-related protein 11
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 220111569 | 220112124 | + | Ag10G02228 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 9,293.58 Da | 52.11 | 60.51 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017240086.1 | PREDICTED: BTB/POZ domain-containing protein At1g21780 isoform X2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5BE54 | BTB domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_022784 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.866629 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 18.753839 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.567417 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 26.728407 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.883432 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 25.295589 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.120639 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.97856 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.009747 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.359201 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 3.772539 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 67.22963 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 68.530891 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 67.789787 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.36537 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.597435 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.006132 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.16409 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 26.074965 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 20.468565 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 16.849522 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 41.325966 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 22.756523 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 19.927399 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 19.974649 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.084782 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 67.629478 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 51.159389 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 40.031506 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 73.10804 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 84.998177 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 8.527285 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 29.228485 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 80.449188 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 256.65863 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 312.830048 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 310.842957 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg21647, jg23166, jg24639, jg6456 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23007, gene_7101 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009133, Ah023666 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g091080, BVRB_5g109530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg18595, Sbi_jg37019, Sbi_jg4221, Sbi_jg49582 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg4869, Seu_jg5659 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000996, GOSA_00017273 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl10618, Sgl15871, Sgl23630, Sgl28830 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000009760, gene:ENSEOMG00000015419 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0010270, CQ.Regalona.r1.1BG0015550 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30039690, pistato.v30151220, pistato.v30151500 |
| Apiaceae | Apium graveolens | 7 | Ag10G02228, Ag2G02305, Ag3G01074, Ag3G02432, Ag3G02433 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G019240, COCNU_11G000050, COCNU_11G006180 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702679, gene-LOC103721052, gene-LOC120107003 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1821.V1.1 |
| Asteraceae | Flaveria trinervia | 6 | Ftri14G02523, Ftri15G05230, Ftri16G14088, Ftri18G11445 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G21780.1, AT1G55760.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008190m.g.v1.0, Thhalv10011642m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g19340.v2.2, Sp1g41340.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g036610.2N, BniB07g000620.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1544, Ceq09G1803 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1707, Cgl09G1976 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g04580, gene.Cymno08g03810 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate05g13750, gene.Thate07g10670, gene.Thate09g19320 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 4 | nbisL1-mrna-12306, nbisL1-mrna-12340, nbisL1-mrna-1488 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.2093, evm.TU.LG06.889 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021681, Pov_00023602 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G11807, Lb4G23064 |
| Poaceae | Echinochloa crus-galli | 6 | AH08.1923, AH08.29, BH01.1424, BH08.2014, CH08.2199, CH08.29 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_8AG0614370, gene-QOZ80_8AG0635610 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0677710.1, HORVU.MOREX.r3.7HG0707210.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_006063, gene-QYE76_029806, gene-QYE76_033656 ... |
| Poaceae | Oryza coarctata | 4 | Oco15G011870, Oco16G000250, Oco16G010710, Oco18G007760 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g01320.1, LOC_Os08g38700.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G004300, gene-BS78_07G176000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402728, Pt_Chr0404009 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr03G010660, Chr16G016440, Chr17G015870, Chr19G012790 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G423900, Tel7E01G558800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC7AG030470, gene_TRIDC7AG045680 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G236400.1, TraesCS7A02G326100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb198850_P003, Zm00001eb199410_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17340, nbis-gene-41379 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g23481, Zma_g24300 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.325, evm.TU.LG01.766, evm.TU.LG04.17 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g09080, gene.Posoc05g16990 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_7_RagTag.1108, evm.TU.Scaffold_7_RagTag.38 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-18738, nbisL1-mrna-8559, nbisL1-mrna-8624 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3333, nbisL1-mrna-5576 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13100, nbisL1-mrna-15030 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.436, evm.TU.utg000018l.16 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002782, Maker00012032 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-7976, nbisL1-mrna-8132, nbisL1-mrna-9357 |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-22562, nbisL1-mrna-23735, nbisL1-mrna-9830 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu00043, populus_peu14740, populus_peu32419 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618145, gene-LOC132627003 |
| Solanaceae | Solanum chilense | 2 | SOLCI004133800, SOLCI005593900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004540, gene-LOC107024139 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.31843_chr09_-, gene_13057 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G0742, TC05G2544, TC06G0568 |
| Zosteraceae | Zostera marina | 1 | Zosma05g21830.v3.1 |