halophFGD

Basic Information

Locus ID: Ag10G02213

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Protein kinase and PP2C-like domain-containing

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	219504580	219511935	-	Ag10G02213

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.43	70,932.77 Da	46.41	89.00	-0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00143	PP2Cc	375	630	2.48682E-84	IPR001932
Pfam	PF00481	Protein phosphatase 2C	376	623	3.4E-65	IPR001932
Pfam	PF00069	Protein kinase domain	60	291	6.4E-17	IPR000719
SUPERFAMILY	SSF81606	PP2C-like	365	631	1.83E-69	IPR036457
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	23	298	8.2E-35	IPR011009
Gene3D	G3DSA:3.60.40.10	-	362	635	3.7E-80	IPR036457
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	14	301	1.7E-28	-
SMART	SM00332	PP2C_4	363	628	5.9E-78	IPR001932
SMART	SM00331	PP2C_SIG_2	388	630	3.3E-7	IPR001932
ProSiteProfiles	PS51746	PPM-type phosphatase domain profile.	373	630	51.36256	IPR001932
ProSiteProfiles	PS50011	Protein kinase domain profile.	28	298	20.796074	IPR000719

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding) GO:0016791 (phosphatase activity)

KEGG Pathway

KO Term:

K17506 (protein phosphatase 1L [EC:3.1.3.16])

Best hit

Source	Best Hit ID	Description
TAIR	AT2G40860.1	protein kinase family protein / protein phosphatase 2C ( PP2C) family protein.
RefSeq	XP_017258048.1	PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q5JJY4	Protein kinase and PP2C-like domain-containing protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0541900 PE=2 SV=1
TrEMBL	A0A164WNJ9	Protein kinase and PP2C-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020602 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	4.199275	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	4.527144	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	6.452212	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	7.226008	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	5.858908	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	6.876096	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	6.028129	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	5.822515	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	27.701262	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	34.387722	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	29.00099	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	31.816015	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	32.970081	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	32.467899	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	10.850204	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	7.89725	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	8.386605	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	12.660018	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	11.376463	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	15.77872	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	16.331133	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	8.247641	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	8.814273	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	8.699731	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	9.434292	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	14.507662	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	9.691196	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	12.670249	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	12.104794	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	14.66114		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	17.235481		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	11.344893		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	17.097672		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	14.454752		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	14.688093		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	9.580026		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	6.610273		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	6.988658		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	30.487051	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	15.882973	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	23.285933	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	33.800762	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	15.593926	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	19.601299	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	15.183565	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	28.682808	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	12.962397	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	25.185566	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	29.085474	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	26.410587	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg15792
Aizoaceae	Mesembryanthemum crystallinum	1	gene_4542
Amaranthaceae	Atriplex hortensis	1	Ah022241
Amaranthaceae	Beta vulgaris	1	BVRB_3g063620
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg58936, Sbi_jg63678
Amaranthaceae	Salicornia europaea	1	Seu_jg23212
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00012942
Amaranthaceae	Suaeda glauca	2	Sgl02336, Sgl07484
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000014493, gene:ENSEOMG00000032399 ... gene:ENSEOMG00000045916
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0023470, CQ.Regalona.r1.3BG0024240
Anacardiaceae	Pistacia vera	1	pistato.v30074770
Apiaceae	Apium graveolens	1	Ag10G02213
Arecaceae	Cocos nucifera	2	COCNU_06G008830, COCNU_06G008840
Arecaceae	Phoenix dactylifera	1	gene-LOC103722343
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.2736.V1.1, AsparagusV1_05.2737.V1.1
Asteraceae	Flaveria trinervia	1	Ftri10G04851
Brassicaceae	Arabidopsis thaliana	1	AT2G40860.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10016363m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp4g23190.v2.2
Brassicaceae	Brassica nigra	1	BniB08g026450.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G0845
Casuarinaceae	Casuarina glauca	1	Cgl04G0954
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno11g00480
Dunaliellaceae	Dunaliella salina	1	Dusal.0320s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g01980, gene.Thate04g23680
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.2668
Plantaginaceae	Plantago ovata	1	Pov_00000079
Plumbaginaceae	Limonium bicolor	1	Lb3G19029
Poaceae	Echinochloa crus-galli	3	AH02.1950, BH02.2006, CH02.2168
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_1AG0020040, gene-QOZ80_1BG0069910
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0264760.1
Poaceae	Lolium multiflorum	1	gene-QYE76_053180
Poaceae	Oryza coarctata	2	Oco01G012100, Oco02G012270
Poaceae	Oryza sativa	1	LOC_Os01g36080.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G168700
Poaceae	Sporobolus alterniflorus	4	Chr03G008180, Chr05G015400, Chr05G015520, Chr05G015620
Poaceae	Thinopyrum elongatum	1	Tel3E01G351100
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG029340, gene_TRIDC3BG056150
Poaceae	Triticum aestivum	3	TraesCS3A02G200800.1, TraesCS3B02G378000.1 ... TraesCS3D02G203100.1
Poaceae	Zea mays	1	Zm00001eb342010_P001
Poaceae	Zoysia japonica	1	nbis-gene-21387
Poaceae	Zoysia macrostachya	1	Zma_g10502
Portulacaceae	Portulaca oleracea	2	evm.TU.LG07.359, evm.TU.LG15.586
Posidoniaceae	Posidonia oceanica	1	gene.Posoc04g01040
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_8_RagTag.222
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-10092
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-8540
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-17852
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000018l.851
Rhizophoraceae	Kandelia obovata	1	Maker00002905
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-3155
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-11381
Salicaceae	Populus euphratica	1	populus_peu26328
Solanaceae	Lycium barbarum	1	gene-LOC132626441
Solanaceae	Solanum chilense	1	SOLCI001366200
Solanaceae	Solanum pennellii	1	gene-LOC107007788
Tamaricaceae	Reaumuria soongarica	1	gene_12404
Tamaricaceae	Tamarix chinensis	1	TC12G2021
Zosteraceae	Zostera marina	1	Zosma03g00750.v3.1