Basic Information
Locus ID:
Ag10G02205
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein of unknown function (DUF632)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 218984076 | 218988984 | + | Ag10G02205 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 84,748.25 Da | 54.25 | 66.59 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04783 | Protein of unknown function (DUF630) | 1 | 59 | 3.7E-23 | IPR006868 |
| Pfam | PF04782 | Protein of unknown function (DUF632) | 307 | 613 | 3.4E-98 | IPR006867 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 187 | - | - |
| Coils | Coil | Coil | 211 | 269 | - | - |
| Coils | Coil | Coil | 615 | 649 | - | - |
| Coils | Coil | Coil | 678 | 702 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52320.2 | 0 | |
| RefSeq | XP_017236375.1 | PREDICTED: uncharacterized protein LOC108209783 [Daucus carota subsp. sativus] | 0 |
| Q9AQW1 | Protein ROLLING AND ERECT LEAF 2 OS=Oryza sativa subsp. japonica OX=39947 GN=REL2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166ELC0 | Nitrate regulatory gene2 protein-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007561 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 35.203007 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.472378 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 32.815357 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 28.138954 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 27.432222 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 35.850307 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 32.632248 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 49.906925 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 27.463358 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 34.082825 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 28.766424 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 27.022778 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 29.534735 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 27.869034 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 20.874269 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.337841 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 22.149553 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 18.060591 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 15.816964 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.721961 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.774815 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 32.401253 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 28.678276 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 29.135473 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 31.139206 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 20.307928 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 16.667791 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.171774 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.448311 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.776695 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.299913 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.322656 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.69778 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.719397 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.350023 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.602664 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.087563 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.732788 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.126093 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.915907 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.04499 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 11.434361 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 20.020367 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 56.478722 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 32.841892 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.854709 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 42.218464 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 24.476515 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 28.83256 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 33.428307 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18170, jg7865 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13255, gene_26143 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010741, Ah034872 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g031650, BVRB_9g220720 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11423, Sbi_jg21028, Sbi_jg22761, Sbi_jg46377 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16635, Seu_jg20704 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005280, GOSA_00018249 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl55904, Sgl61093, Sgl62434, Sgl66976 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000017478, gene:ENSEOMG00000018365 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0016570, CQ.Regalona.r1.2BG0018390 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30125500, pistato.v30253280 |
| Apiaceae | Apium graveolens | 3 | Ag10G02205, Ag6G01319, Ag9G01146 |
| Arecaceae | Cocos nucifera | 4 | COCNU_12G004420, COCNU_16G001050, scaffold002164G000020 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695745, gene-LOC103714416, gene-LOC103720359 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.1461.V1.1, AsparagusV1_05.621.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G10828, Ftri4G22733 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G52320.2, AT5G25590.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003682m.g.v1.0, Thhalv10011250m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g38900.v2.2, Sp2g21940.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g078120.2N, BniB04g057510.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G2131, Ceq05G0262 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2335 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g03250, gene.Cymno10g06160, gene.Cymno14g09790 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g10090, gene.Thate02g36890 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3218, nbisL1-mrna-7412 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.359, evm.TU.LG07.1358 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00013652, Pov_00015418, Pov_00024966 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G18449, Lb3G21342 |
| Poaceae | Echinochloa crus-galli | 9 | AH05.2081, AH05.2578, BH03.712, BH05.2214, BH05.2215 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1BG0064850, gene-QOZ80_5AG0374340 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0064160.1, HORVU.MOREX.r3.2HG0122080.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_013445, gene-QYE76_013480, gene-QYE76_017584 ... |
| Poaceae | Oryza coarctata | 6 | Oco01G010790, Oco02G011710, Oco09G008880, Oco10G009020 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g31580.1, LOC_Os05g32760.1, LOC_Os07g11070.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G102000, gene-BS78_09G134300, gene-BS78_K057600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0303882, Pt_Chr0505141, Pt_Chr0505387 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G012530, Chr01G021130, Chr12G016830, Chr12G024200 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G006400, Tel1E01G409000, Tel2E01G309400 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG037140, gene_TRIDC1BG042120 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G247500.1, TraesCS1B02G258100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb132150_P003, Zm00001eb303290_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-14524, nbis-gene-26653, nbis-gene-52843 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g26414, Zma_g26807, Zma_g28190, Zma_g6184 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG07.1704, evm.TU.LG07.634, evm.TU.LG08.1677 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g06660, gene.Posoc06g17430 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1269 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13692, nbisL1-mrna-6987 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11915, nbisL1-mrna-13887 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-8852, nbisL1-mrna-9040 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.121, evm.TU.utg000033l.576 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003904, Maker00014769 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16386, nbisL1-mrna-3823 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18002, nbisL1-mrna-7924 |
| Salicaceae | Populus euphratica | 5 | populus_peu02758, populus_peu02759, populus_peu04859 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132633337, gene-LOC132635675 |
| Solanaceae | Solanum chilense | 1 | SOLCI003331900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107015170, gene-LOC107028786 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.21287_chr09_-, STRG.4148_chr03_-, gene_10897 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G1677, TC08G2049, TC10G1967 |
| Zosteraceae | Zostera marina | 2 | Zosma03g29360.v3.1, Zosma06g22480.v3.1 |