Basic Information
Locus ID:
Ag10G02170
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
mRNA transport
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 217861911 | 217870636 | + | Ag10G02170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 38,275.02 Da | 40.29 | 88.56 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 10 | 315 | 5.49E-21 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 151 | 326 | 8.3E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 136 | 1.5E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 144 | 183 | 0.89 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 158 | 186 | 8.570195 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56900.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017256702.1 | PREDICTED: aladin [Daucus carota subsp. sativus] | 0 |
| Q8GWR1 | Aladin OS=Arabidopsis thaliana OX=3702 GN=AAAS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2R6Q4C9 | Aladin like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23075 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.843438 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.527937 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.249803 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.029566 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.718172 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.837002 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.196202 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.419496 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 20.892986 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 21.42819 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 20.148579 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.181051 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.893404 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.219086 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.337097 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.005688 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.153433 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.04436 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.342633 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.8301 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.580014 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.714026 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.258359 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.13002 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.988049 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.034925 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 14.042751 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.149489 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.052227 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.525589 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.741975 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.91039 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.537539 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.967452 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.326139 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.969029 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.912905 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.374271 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.819956 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.368165 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.449073 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.464854 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.532634 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 28.840117 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.443087 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.508457 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.012295 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.769215 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.680769 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.827103 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33194 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19128 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah022343, Ah022344 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g064060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg58968, Sbi_jg63647 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23237 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00012909, GOSA_00012912, GOSA_00012913 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02395, Sgl07545 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012296, gene:ENSEOMG00000029864 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0023820, CQ.Regalona.r1.3BG0024720 |
| Apiaceae | Apium graveolens | 1 | Ag10G02170 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G005790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709036 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1442.V1.1, AsparagusV1_02.1443.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G10544 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G56900.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005968m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g05690.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g071510.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0832 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0943 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g13270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0063s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate06g05240, gene.Thate08g18310 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2672 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000139, Pov_00000142 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G16010, Lb3G17383 |
| Poaceae | Echinochloa crus-galli | 6 | AH04.168, BH04.183, BH05.119, CH04.193, CH05.183 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0673500, gene-QOZ80_9BG0697190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0462720.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003408 |
| Poaceae | Oryza coarctata | 3 | Oco03G009740, Oco21G000380, Oco23G001170 |
| Poaceae | Oryza sativa | 3 | LOC_Os11g03794.1, LOC_Os12g03540.1, LOC_Os12g03601.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G010000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0702957, Pt_Chr0703117, Pt_Chr0703123, Pt_Chr0703156 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G021530, Chr05G021650, Chr06G023130, Chr16G008900 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G247100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG023470, gene_TRIDC5BG024780 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G138500.1, TraesCS5B02G138600.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb405260_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40116, nbis-gene-52922 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g17526, Zma_g17527, Zma_g25463 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2061, evm.TU.LG15.1077 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g28280 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1572, evm.TU.Scaffold_8_RagTag.235 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19897 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19380 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13505 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.129 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012134 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13174 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12262 |
| Salicaceae | Populus euphratica | 1 | populus_peu26334 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609166 |
| Solanaceae | Solanum chilense | 1 | SOLCI003159800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028912 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12400 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G2050 |
| Zosteraceae | Zostera marina | 1 | Zosma03g30045.v3.1 |