Basic Information
Locus ID:
Ag10G02139
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
inactive leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 216957675 | 216962479 | + | Ag10G02139 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 87,129.90 Da | 51.08 | 101.21 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 179 | 236 | 7.3E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 482 | 748 | 2.4E-19 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 27 | 356 | 1.22E-47 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 460 | 753 | 5.05E-42 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 245 | 5.1E-39 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 450 | 560 | 5.3E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 561 | 771 | 2.2E-29 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 246 | 377 | 9.5E-19 | IPR032675 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 202 | 224 | 8.435821 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 478 | 753 | 23.947956 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 758 | 783 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03770.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017214910.1 | PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q8LFN2 | Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana OX=3702 GN=At3g03770 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161ZXT4 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020655 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.606977 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.232056 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.631618 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.864029 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.271624 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.314732 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.834273 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.431548 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.029078 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.389626 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.516361 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.813833 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.979866 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.104929 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.572074 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.475556 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.022093 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.292682 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.2044 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.617039 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.368615 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.943878 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.797424 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.926163 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.845819 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.919522 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.74542 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.326539 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.32392 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.053396 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.95234 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.41283 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.768573 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.74479 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.990657 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.970851 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.698036 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.857612 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 21.427401 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.655192 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.055519 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.129077 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.639411 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.991166 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.541286 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.101301 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 18.068615 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.400669 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.184803 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.557249 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15215 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11456, gene_15306 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah002802, Ah006606 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g099400 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg202, Sbi_jg27947, Sbi_jg32624, Sbi_jg36339 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg4411, Seu_jg7511 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00027488, GOSA_00029022 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl25324, Sgl25330, Sgl30501, Sgl30502, Sgl53564, Sgl58828 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000007631, gene:ENSEOMG00000020507 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0013380, CQ.Regalona.r1.5AG0012160 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30093140, pistato.v30168970 |
| Apiaceae | Apium graveolens | 3 | Ag10G02139, Ag3G00727, Ag4G01421 |
| Arecaceae | Cocos nucifera | 1 | scaffold029945G000030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697058, gene-LOC120103816 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G07591, Ftri16G24030 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G03770.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020088m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02740.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g059690.2N, BniB07g033990.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G1435, Ceq08G1594 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1466, Cgl08G1629 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g13840 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g29020, gene.Thate02g40110 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2007 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00014732, Pov_00039450 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G05687, Lb1G05702, Lb3G16811, Lb4G23243, Lb6G31534 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.169, AH03.326, BH03.3920, BH03.405, CH01.431, CH03.475 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0213030, gene-QOZ80_3BG0258190 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0151770.1, HORVU.MOREX.r3.5HG0517490.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_042644, gene-QYE76_061430 |
| Poaceae | Oryza coarctata | 4 | Oco05G025730, Oco06G026600, Oco13G002090, Oco14G002190 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g57780.1, LOC_Os07g07230.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G054200, gene-BS78_02G044300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0105334, Pt_Chr0303608 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G003080, Chr0G004870, Chr12G034950, Chr19G017530 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G451200, Tel5E01G671600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG034220, gene_TRIDC2BG038760 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G243400.4, TraesCS2B02G270100.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb060390_P002, Zm00001eb300880_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15320, nbis-gene-26906 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g311, Zma_g6034 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1377, evm.TU.LG11.760, evm.TU.LG18.473 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g01110 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1090, evm.TU.Scaffold_2_RagTag.1805 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-2999, nbisL1-mrna-3169, nbisL1-mrna-6521 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12491, nbisL1-mrna-362 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13902, nbisL1-mrna-21120 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.215, evm.TU.utg000016l.857 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005341, Maker00016894 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11042, nbisL1-mrna-12821 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13298, nbisL1-mrna-16380 |
| Salicaceae | Populus euphratica | 3 | populus_peu06037, populus_peu16123, populus_peu19349 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607281, gene-LOC132645325 |
| Solanaceae | Solanum chilense | 3 | SOLCI002478900, SOLCI003140300, SOLCI004726300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002815, gene-LOC107005571, gene-LOC107008606 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.24461_chr08_-, gene_12220 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2416, TC05G3057 |
| Zosteraceae | Zostera marina | 2 | Zosma05g32970.v3.1, Zosma06g29810.v3.1 |