halophFGD

Basic Information

Locus ID: Ag10G02120

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: UBP12

Description: Belongs to the peptidase C19 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	216420794	216442219	-	Ag10G02120

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.48	133,085.97 Da	44.23	77.51	-0.66

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00121	MATH	72	195	2.47912E-36	IPR002083
CDD	cd02659	peptidase_C19C	213	541	6.31141E-163	-
Pfam	PF14533	Ubiquitin-specific protease C-terminal	902	1114	1.0E-56	IPR029346
Pfam	PF12436	ICP0-binding domain of Ubiquitin-specific protease 7	640	892	4.2E-76	IPR024729
Pfam	PF00443	Ubiquitin carboxyl-terminal hydrolase	215	536	9.8E-46	IPR001394
Pfam	PF00917	MATH domain	78	196	6.4E-20	IPR002083
SUPERFAMILY	SSF54001	Cysteine proteinases	210	568	1.12E-95	IPR038765
SUPERFAMILY	SSF49599	TRAF domain-like	71	202	6.54E-40	-
Gene3D	G3DSA:3.10.20.90	-	700	817	7.1E-44	-
Gene3D	G3DSA:2.60.210.10	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	68	211	1.6E-52	IPR008974
Gene3D	G3DSA:3.10.20.90	-	818	915	4.0E-26	-
Gene3D	G3DSA:3.90.70.10	Cysteine proteinases	212	540	4.8E-87	-
SMART	SM00061	math_3	72	176	4.4E-20	IPR002083
ProSiteProfiles	PS50235	Ubiquitin specific protease (USP) domain profile.	215	539	38.644119	IPR028889
ProSiteProfiles	PS50144	MATH/TRAF domain profile.	70	195	36.83213	IPR002083
ProSitePatterns	PS00972	Ubiquitin specific protease (USP) domain signature 1.	216	231	-	IPR018200
ProSitePatterns	PS00973	Ubiquitin specific protease (USP) domain signature 2.	455	472	-	IPR018200
Coils	Coil	Coil	552	572	-	-

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process) GO:0016579 (protein deubiquitination)

Molecular Function:

GO:0004843 (cysteine-type deubiquitinase activity) GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K11838 (ubiquitin carboxyl-terminal hydrolase 7 [EC:3.4.19.12])

Pathway:

ko04068 (FoxO signaling pathway) map04068 (FoxO signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G11910.2	ubiquitin-specific protease 13.
RefSeq	XP_017257989.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FPT1	Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2
TrEMBL	A0A164WLY3	ubiquitinyl hydrolase 1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020674 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	56.442776	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	41.893337	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	71.752342	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	72.324661	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	68.340889	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	76.146606	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	76.807304	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	80.364731	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	47.460205	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	48.436897	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	49.543182	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	45.506409	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	45.620605	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	35.194931	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	21.112387	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	26.565805	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	25.138369	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	34.941093	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	26.582886	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	28.661791	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	30.945993	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	25.275093	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	26.556864	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	28.717556	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	25.846668	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	38.911819	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	29.406387	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	30.262552	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	35.700829	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.721892		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.531713		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.678133		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	13.352379		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	10.614337		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	14.711856		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	7.556314		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	4.996146		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	5.064776		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	28.566544	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	16.536121	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	14.997654	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	23.144867	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	17.95755	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	30.415001	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	25.956171	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	26.39366	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	26.844074	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	30.884102	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	26.13896	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	21.527788	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg14380, jg15189, jg16400, jg3692
Aizoaceae	Mesembryanthemum crystallinum	2	gene_2338, gene_5748
Amaranthaceae	Atriplex hortensis	2	Ah002944, Ah027763
Amaranthaceae	Beta vulgaris	2	BVRB_5g109330, BVRB_7g171470
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg1476, Sbi_jg15855, Sbi_jg35076, Sbi_jg56646
Amaranthaceae	Salicornia europaea	2	Seu_jg13841, Seu_jg3266
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003436, GOSA_00028072
Amaranthaceae	Suaeda glauca	4	Sgl52695, Sgl57982, Sgl72692, Sgl76231
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007647, gene:ENSEOMG00000007785 ... gene:ENSEOMG00000022426, gene:ENSEOMG00000025171, gene:ENSEOMG00000035880, gene:ENSEOMG00000041819
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0011880, CQ.Regalona.r1.5BG0012330 ... CQ.Regalona.r1.7AG0005100, CQ.Regalona.r1.9BG0000700
Anacardiaceae	Pistacia vera	4	pistato.v30055600, pistato.v30169130, pistato.v30277290 ... pistato.v30277770
Apiaceae	Apium graveolens	4	Ag10G02119, Ag10G02120, Ag3G00705, AgUnG00047
Arecaceae	Cocos nucifera	3	COCNU_03G000270, COCNU_06G018260, COCNU_08G000240
Arecaceae	Phoenix dactylifera	3	gene-LOC103696442, gene-LOC103707271, gene-LOC103720599
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.3391.V1.1, AsparagusV1_03.441.V1.1 ... AsparagusV1_05.1674.V1.1, AsparagusV1_07.3390.V1.1
Asteraceae	Flaveria trinervia	7	Ftri11G06966, Ftri17G33792, Ftri18G06455, Ftri6G28641 ... Ftri6G32788, Ftri8G00768, Ftri8G14509
Brassicaceae	Arabidopsis thaliana	2	AT3G11910.1, AT5G06600.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10012503m.g.v1.0, Thhalv10019920m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g10120.v2.2, Sp6g36260.v2.2
Brassicaceae	Brassica nigra	5	BniB01g053070.2N, BniB02g054180.2N, BniB05g028730.2N ... BniB07g025650.2N, BniB08g002650.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G1225, Ceq05G1526, Ceq08G1613
Casuarinaceae	Casuarina glauca	3	Cgl04G1385, Cgl05G1524, Cgl08G1653
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g00260, gene.Cymno06g14030
Dunaliellaceae	Dunaliella salina	1	Dusal.0097s00017.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g04470, gene.Thate08g10280
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-1230, nbisL1-mrna-4081, nbisL1-mrna-441 ... nbisL1-mrna-6467, nbisL1-mrna-8507
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1794, evm.TU.LG09.517
Plantaginaceae	Plantago ovata	4	Pov_00003610, Pov_00015727, Pov_00026564, Pov_00040140
Plumbaginaceae	Limonium bicolor	4	Lb3G19271, Lb3G19275, Lb3G20266, Lb4G25833
Poaceae	Echinochloa crus-galli	12	AH02.3420, AH03.307, AH04.1721, AH05.3493, BH02.3548 ... BH03.389, BH04.1706, BH05.3500, CH02.3076, CH03.456, CH04.1949, CH05.3642
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0034930, gene-QOZ80_1BG0084980 ... gene-QOZ80_5AG0390540, gene-QOZ80_5BG0440250, gene-QOZ80_7AG0556660, gene-QOZ80_7BG0587560, gene-QOZ80_9AG0684800, gene-QOZ80_9BG0710870
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0151540.1, HORVU.MOREX.r3.3HG0292280.1 ... HORVU.MOREX.r3.4HG0365190.1, HORVU.MOREX.r3.5HG0451020.1
Poaceae	Lolium multiflorum	5	gene-QYE76_007548, gene-QYE76_008182, gene-QYE76_042616 ... gene-QYE76_059489, gene-QYE76_066479
Poaceae	Oryza coarctata	6	Oco01G021420, Oco02G022160, Oco13G001950, Oco14G002020 ... Oco23G006640, Oco24G006310
Poaceae	Oryza sativa	4	LOC_Os01g56490.1, LOC_Os07g06950.1, LOC_Os11g36470.1 ... LOC_Os12g30540.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G042300, gene-BS78_03G290900 ... gene-BS78_08G072800
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0103145, Pt_Chr0300142, Pt_Chr0303579, Pt_Chr0303603 ... Pt_Chr0405668, Pt_Chr0703499
Poaceae	Sporobolus alterniflorus	17	Chr03G017240, Chr04G015370, Chr05G025090, Chr06G015980 ... Chr07G015920, Chr08G017210, Chr0G002380, Chr0G003680, Chr0G004780, Chr16G005540, Chr17G004920, Chr19G010530, Chr19G017620, Chr24G000960, Chr27G005610, Chr28G001310, Chr31G007000
Poaceae	Thinopyrum elongatum	4	Tel2E01G452500, Tel3E01G502300, Tel4E01G264900 ... Tel5E01G206100
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG034050, gene_TRIDC2BG039010 ... gene_TRIDC3AG045230, gene_TRIDC3BG051190, gene_TRIDC4AG025240, gene_TRIDC4BG028570, gene_TRIDC5AG016510, gene_TRIDC5BG019640
Poaceae	Triticum aestivum	11	TraesCS2A02G246800.3, TraesCS2B02G263500.4 ... TraesCS2D02G249100.1, TraesCS3A02G295900.7, TraesCS3B02G341000.1, TraesCS3D02G307100.1, TraesCS4A02G163000.1, TraesCS4D02G165800.1, TraesCS5A02G105900.1, TraesCS5B02G111000.7, TraesCS5D02G123300.4
Poaceae	Zea mays	6	Zm00001eb117210_P003, Zm00001eb132880_P002 ... Zm00001eb151920_P003, Zm00001eb200320_P001, Zm00001eb300680_P003, Zm00001eb408670_P001
Poaceae	Zoysia japonica	3	nbis-gene-26919, nbis-gene-31201, nbis-gene-35733
Poaceae	Zoysia macrostachya	6	Zma_g11243, Zma_g18097, Zma_g25067, Zma_g25821, Zma_g4768 ... Zma_g6025
Portulacaceae	Portulaca oleracea	4	evm.TU.LG18.267, evm.TU.LG19.1098, evm.TU.LG24.1099 ... evm.TU.LG26.808
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g00540, gene.Posoc07g09260
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.1084, evm.TU.Scaffold_1_RagTag.1292 ... evm.TU.Scaffold_2_RagTag.1223
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-3880, nbisL1-mrna-6304, nbisL1-mrna-6525
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12487, nbisL1-mrna-17286, nbisL1-mrna-18129
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-18774, nbisL1-mrna-21124, nbisL1-mrna-4147
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.487, evm.TU.utg000016l.371 ... evm.TU.utg000016l.860
Rhizophoraceae	Kandelia obovata	3	Maker00005311, Maker00016405, Maker00017060
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-11044, nbisL1-mrna-12390, nbisL1-mrna-7542
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13292, nbisL1-mrna-13474, nbisL1-mrna-5502
Salicaceae	Populus euphratica	2	populus_peu06023, populus_peu26016
Solanaceae	Lycium barbarum	5	gene-LOC132600678, gene-LOC132603747, gene-LOC132607257 ... gene-LOC132615832, gene-LOC132640124
Solanaceae	Solanum chilense	4	SOLCI000938900, SOLCI001502600, SOLCI002727600 ... SOLCI003293800
Solanaceae	Solanum pennellii	5	gene-LOC107002269, gene-LOC107004680, gene-LOC107004751 ... gene-LOC107020448, gene-LOC107022576
Tamaricaceae	Reaumuria soongarica	4	gene_13242, gene_16085, gene_3020, gene_7265
Tamaricaceae	Tamarix chinensis	4	TC01G1143, TC05G3022, TC09G0679, TC11G1253
Zosteraceae	Zostera marina	4	Zosma02g00170.v3.1, Zosma04g06340.v3.1, Zosma06g30480.v3.1 ... Zosma06g30490.v3.1