halophFGD

Basic Information

Locus ID: Ag10G02119

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: UBP12

Description: Ubiquitin carboxyl-terminal hydrolase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	216202968	216221703	-	Ag10G02119

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.52	130,999.95 Da	40.43	81.33	-0.58

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00121	MATH	60	183	2.35441E-34	IPR002083
CDD	cd02659	peptidase_C19C	201	529	4.53341E-157	-
Pfam	PF12436	ICP0-binding domain of Ubiquitin-specific protease 7	628	879	2.3E-68	IPR024729
Pfam	PF00443	Ubiquitin carboxyl-terminal hydrolase	203	524	9.4E-47	IPR001394
Pfam	PF00917	MATH domain	66	184	1.0E-15	IPR002083
Pfam	PF14533	Ubiquitin-specific protease C-terminal	889	1099	4.7E-52	IPR029346
SUPERFAMILY	SSF49599	TRAF domain-like	59	190	1.96E-38	-
SUPERFAMILY	SSF54001	Cysteine proteinases	198	553	2.94E-94	IPR038765
Gene3D	G3DSA:2.60.210.10	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	58	199	2.7E-49	IPR008974
Gene3D	G3DSA:3.10.20.90	-	805	902	4.4E-20	-
Gene3D	G3DSA:3.90.70.10	Cysteine proteinases	200	528	4.8E-86	-
Gene3D	G3DSA:3.10.20.90	-	690	804	2.4E-39	-
SMART	SM00061	math_3	61	164	1.5E-20	IPR002083
ProSiteProfiles	PS50235	Ubiquitin specific protease (USP) domain profile.	203	527	38.815784	IPR028889
ProSiteProfiles	PS50144	MATH/TRAF domain profile.	59	183	34.070625	IPR002083
ProSitePatterns	PS00972	Ubiquitin specific protease (USP) domain signature 1.	204	219	-	IPR018200
ProSitePatterns	PS00973	Ubiquitin specific protease (USP) domain signature 2.	443	460	-	IPR018200

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process) GO:0016579 (protein deubiquitination)

Molecular Function:

GO:0004843 (cysteine-type deubiquitinase activity) GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K11838 (ubiquitin carboxyl-terminal hydrolase 7 [EC:3.4.19.12])

Pathway:

ko04068 (FoxO signaling pathway) map04068 (FoxO signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G11910.1	ubiquitin-specific protease 13.
RefSeq	XP_017258034.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q84WU2	Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1
TrEMBL	A0A161ZXS1	ubiquitinyl hydrolase 1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020675 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	46.034595	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	30.817039	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	34.092224	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	35.286011	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	37.018105	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	34.25399	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	39.494484	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	25.931917	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	31.129192	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	33.416889	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	33.533604	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	34.126171	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	35.635597	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	26.815084	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	16.025349	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	19.080133	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	19.17268	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	25.364353	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	18.219067	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	25.909159	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	33.169483	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	31.192259	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	32.446476	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	34.679371	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	31.941465	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	29.39636	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	22.746235	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	25.801657	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	29.834272	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	8.25147		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	16.070168		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	9.936774		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	15.966128		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	14.804614		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	16.574585		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	12.326545		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	9.906124		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	8.173603		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	18.077642	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	18.323713	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	14.051119	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	13.714975	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	20.255831	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	31.764759	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	33.16563	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	18.455814	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	32.607479	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	26.473621	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	27.245331	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	26.668966	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg14380, jg15189, jg16400, jg3692
Aizoaceae	Mesembryanthemum crystallinum	2	gene_2338, gene_5748
Amaranthaceae	Atriplex hortensis	2	Ah002944, Ah027763
Amaranthaceae	Beta vulgaris	2	BVRB_5g109330, BVRB_7g171470
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg1476, Sbi_jg15855, Sbi_jg35076, Sbi_jg56646
Amaranthaceae	Salicornia europaea	2	Seu_jg13841, Seu_jg3266
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003436, GOSA_00028072
Amaranthaceae	Suaeda glauca	4	Sgl52695, Sgl57982, Sgl72692, Sgl76231
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007647, gene:ENSEOMG00000007785 ... gene:ENSEOMG00000022426, gene:ENSEOMG00000025171, gene:ENSEOMG00000035880, gene:ENSEOMG00000041819
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0011880, CQ.Regalona.r1.5BG0012330 ... CQ.Regalona.r1.7AG0005100, CQ.Regalona.r1.9BG0000700
Anacardiaceae	Pistacia vera	4	pistato.v30055600, pistato.v30169130, pistato.v30277290 ... pistato.v30277770
Apiaceae	Apium graveolens	4	Ag10G02119, Ag10G02120, Ag3G00705, AgUnG00047
Arecaceae	Cocos nucifera	3	COCNU_03G000270, COCNU_06G018260, COCNU_08G000240
Arecaceae	Phoenix dactylifera	3	gene-LOC103696442, gene-LOC103707271, gene-LOC103720599
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.3391.V1.1, AsparagusV1_03.441.V1.1 ... AsparagusV1_05.1674.V1.1, AsparagusV1_07.3390.V1.1
Asteraceae	Flaveria trinervia	7	Ftri11G06966, Ftri17G33792, Ftri18G06455, Ftri6G28641 ... Ftri6G32788, Ftri8G00768, Ftri8G14509
Brassicaceae	Arabidopsis thaliana	2	AT3G11910.1, AT5G06600.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10012503m.g.v1.0, Thhalv10019920m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g10120.v2.2, Sp6g36260.v2.2
Brassicaceae	Brassica nigra	5	BniB01g053070.2N, BniB02g054180.2N, BniB05g028730.2N ... BniB07g025650.2N, BniB08g002650.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G1225, Ceq05G1526, Ceq08G1613
Casuarinaceae	Casuarina glauca	3	Cgl04G1385, Cgl05G1524, Cgl08G1653
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g00260, gene.Cymno06g14030
Dunaliellaceae	Dunaliella salina	1	Dusal.0097s00017.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g04470, gene.Thate08g10280
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-1230, nbisL1-mrna-4081, nbisL1-mrna-441 ... nbisL1-mrna-6467, nbisL1-mrna-8507
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1794, evm.TU.LG09.517
Plantaginaceae	Plantago ovata	4	Pov_00003610, Pov_00015727, Pov_00026564, Pov_00040140
Plumbaginaceae	Limonium bicolor	4	Lb3G19271, Lb3G19275, Lb3G20266, Lb4G25833
Poaceae	Echinochloa crus-galli	12	AH02.3420, AH03.307, AH04.1721, AH05.3493, BH02.3548 ... BH03.389, BH04.1706, BH05.3500, CH02.3076, CH03.456, CH04.1949, CH05.3642
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0034930, gene-QOZ80_1BG0084980 ... gene-QOZ80_5AG0390540, gene-QOZ80_5BG0440250, gene-QOZ80_7AG0556660, gene-QOZ80_7BG0587560, gene-QOZ80_9AG0684800, gene-QOZ80_9BG0710870
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0151540.1, HORVU.MOREX.r3.3HG0292280.1 ... HORVU.MOREX.r3.4HG0365190.1, HORVU.MOREX.r3.5HG0451020.1
Poaceae	Lolium multiflorum	5	gene-QYE76_007548, gene-QYE76_008182, gene-QYE76_042616 ... gene-QYE76_059489, gene-QYE76_066479
Poaceae	Oryza coarctata	6	Oco01G021420, Oco02G022160, Oco13G001950, Oco14G002020 ... Oco23G006640, Oco24G006310
Poaceae	Oryza sativa	4	LOC_Os01g56490.1, LOC_Os07g06950.1, LOC_Os11g36470.1 ... LOC_Os12g30540.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G042300, gene-BS78_03G290900 ... gene-BS78_08G072800
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0103145, Pt_Chr0300142, Pt_Chr0303579, Pt_Chr0303603 ... Pt_Chr0405668, Pt_Chr0703499
Poaceae	Sporobolus alterniflorus	17	Chr03G017240, Chr04G015370, Chr05G025090, Chr06G015980 ... Chr07G015920, Chr08G017210, Chr0G002380, Chr0G003680, Chr0G004780, Chr16G005540, Chr17G004920, Chr19G010530, Chr19G017620, Chr24G000960, Chr27G005610, Chr28G001310, Chr31G007000
Poaceae	Thinopyrum elongatum	4	Tel2E01G452500, Tel3E01G502300, Tel4E01G264900 ... Tel5E01G206100
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG034050, gene_TRIDC2BG039010 ... gene_TRIDC3AG045230, gene_TRIDC3BG051190, gene_TRIDC4AG025240, gene_TRIDC4BG028570, gene_TRIDC5AG016510, gene_TRIDC5BG019640
Poaceae	Triticum aestivum	11	TraesCS2A02G246800.3, TraesCS2B02G263500.4 ... TraesCS2D02G249100.1, TraesCS3A02G295900.7, TraesCS3B02G341000.1, TraesCS3D02G307100.1, TraesCS4A02G163000.1, TraesCS4D02G165800.1, TraesCS5A02G105900.1, TraesCS5B02G111000.7, TraesCS5D02G123300.4
Poaceae	Zea mays	6	Zm00001eb117210_P003, Zm00001eb132880_P002 ... Zm00001eb151920_P003, Zm00001eb200320_P001, Zm00001eb300680_P003, Zm00001eb408670_P001
Poaceae	Zoysia japonica	3	nbis-gene-26919, nbis-gene-31201, nbis-gene-35733
Poaceae	Zoysia macrostachya	6	Zma_g11243, Zma_g18097, Zma_g25067, Zma_g25821, Zma_g4768 ... Zma_g6025
Portulacaceae	Portulaca oleracea	4	evm.TU.LG18.267, evm.TU.LG19.1098, evm.TU.LG24.1099 ... evm.TU.LG26.808
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g00540, gene.Posoc07g09260
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.1084, evm.TU.Scaffold_1_RagTag.1292 ... evm.TU.Scaffold_2_RagTag.1223
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-3880, nbisL1-mrna-6304, nbisL1-mrna-6525
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12487, nbisL1-mrna-17286, nbisL1-mrna-18129
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-18774, nbisL1-mrna-21124, nbisL1-mrna-4147
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.487, evm.TU.utg000016l.371 ... evm.TU.utg000016l.860
Rhizophoraceae	Kandelia obovata	3	Maker00005311, Maker00016405, Maker00017060
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-11044, nbisL1-mrna-12390, nbisL1-mrna-7542
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13292, nbisL1-mrna-13474, nbisL1-mrna-5502
Salicaceae	Populus euphratica	2	populus_peu06023, populus_peu26016
Solanaceae	Lycium barbarum	5	gene-LOC132600678, gene-LOC132603747, gene-LOC132607257 ... gene-LOC132615832, gene-LOC132640124
Solanaceae	Solanum chilense	4	SOLCI000938900, SOLCI001502600, SOLCI002727600 ... SOLCI003293800
Solanaceae	Solanum pennellii	5	gene-LOC107002269, gene-LOC107004680, gene-LOC107004751 ... gene-LOC107020448, gene-LOC107022576
Tamaricaceae	Reaumuria soongarica	4	gene_13242, gene_16085, gene_3020, gene_7265
Tamaricaceae	Tamarix chinensis	4	TC01G1143, TC05G3022, TC09G0679, TC11G1253
Zosteraceae	Zostera marina	4	Zosma02g00170.v3.1, Zosma04g06340.v3.1, Zosma06g30480.v3.1 ... Zosma06g30490.v3.1