Basic Information
Locus ID:
Ag10G02117
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 216104376 | 216107373 | - | Ag10G02117 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.06 | 58,327.00 Da | 46.86 | 81.32 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13621 | Cupin-like domain | 207 | 426 | 1.7E-23 | IPR041667 |
| Pfam | PF12937 | F-box-like | 94 | 134 | 1.6E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 86 | 154 | 2.22E-12 | IPR036047 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 198 | 440 | 2.88E-57 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 180 | 428 | 6.7E-77 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 82 | 179 | 7.3E-9 | - |
| SMART | SM00558 | cupin_9 | 274 | 443 | 1.6E-14 | IPR003347 |
| SMART | SM00256 | fbox_2 | 92 | 132 | 0.0016 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 86 | 132 | 9.470975 | IPR001810 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 283 | 443 | 37.208569 | IPR003347 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06550.1 | 0 | |
| RefSeq | XP_017257848.1 | PREDICTED: F-box protein At5g06550 [Daucus carota subsp. sativus] | 0 |
| Q67XX3 | Arginine-specific demethylase JMJ22 OS=Arabidopsis thaliana OX=3702 GN=JMJ22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161WTP1 | F-box protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020678 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.831253 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.087392 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.134296 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.627827 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.549898 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.381146 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.679639 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.712859 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 20.376041 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 26.154781 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.349993 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 27.424614 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.02799 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.724731 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.237858 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.952209 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.539608 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.176027 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.26655 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.767059 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.514876 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.668836 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.215239 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.862142 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.872338 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.230607 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.429403 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.833899 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.928158 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.882161 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.380968 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 11.180686 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.174256 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.566895 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.581978 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.877498 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.928621 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.176879 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.997496 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.182781 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.356987 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.613836 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 12.796372 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 14.143731 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.84334 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 17.337471 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.210411 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.756652 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 13.847534 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.769358 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31898 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15283 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002928 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15827, Sbi_jg56622 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13827 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00014437, GOSA_00027055, GOSA_00027172 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52609, Sgl57899 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006593, gene:ENSEOMG00000022129 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0011970, CQ.Regalona.r1.5BG0012210 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30277130 |
| Apiaceae | Apium graveolens | 1 | Ag10G02117 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707320 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1642.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G03641 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G06550.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013290m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g36310.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g054230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0985 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1109, Cgl04G1404 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g06260 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0308s00011.v1.0, Dusal.0823s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g10250 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1774 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036291 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11166 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1692, BH04.1685, CH04.1923 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0684970, gene-QOZ80_9BG0711040 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0731150.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066485 |
| Poaceae | Oryza coarctata | 2 | Oco21G007470, Oco22G008630 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g36450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G172100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103291 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G015970, Chr16G005580, Chr17G004990, Chr31G006960 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G744700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG061620, gene_TRIDC7BG054800 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G443400.1, TraesCS7B02G342200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb200180_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44217 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18094 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1040, evm.TU.LG20.835 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g09160 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1086 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4101 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14686 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10188 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.595 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005368 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12503 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5670 |
| Salicaceae | Populus euphratica | 1 | populus_peu26006 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607255 |
| Solanaceae | Solanum chilense | 1 | SOLCI000938700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032279 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12209 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G3018 |
| Zosteraceae | Zostera marina | 1 | Zosma06g18780.v3.1 |