Basic Information
Locus ID:
Ag10G02045
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Essential component of the cytosolic iron-sulfur (Fe S) protein assembly machinery. Required for the maturation of extramitochondrial Fe S proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 212130947 | 212133276 | - | Ag10G02045 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 19,431.56 Da | 33.52 | 59.70 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 66 | 95 | 2.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 13 | 53 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 110 | 140 | 0.0027 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 10 | 141 | 1.39E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 160 | 3.4E-39 | IPR015943 |
| SMART | SM00320 | WD40_4 | 9 | 54 | 3.3E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 102 | 141 | 5.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 57 | 96 | 7.4E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 109 | 140 | 10.909469 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 64 | 97 | 9.783781 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 16 | 53 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 64 | 97 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 16 | 53 | 8.966513 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 109 | 140 | 9.151057 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 41 | 55 | 8.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 83 | 97 | 8.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 128 | 142 | 8.0E-5 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32990.2 | - | 0 |
| RefSeq | XP_024037865.1 | protein CIA1 isoform X2 [Citrus clementina] | 0 |
| O80990 | Protein CIA1 OS=Arabidopsis thaliana OX=3702 GN=CIA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A164WKA2 | Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020747 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.914772 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.910821 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.275041 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.116869 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.993502 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.458099 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.803043 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.418335 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 49.658039 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 48.43372 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 54.383686 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 43.238647 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 45.370712 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 37.085182 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.984681 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.942854 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 15.979278 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 10.479315 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.822872 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.659708 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.869548 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.131954 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.20314 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 18.569214 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.414989 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.902891 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.421668 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.943322 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.372252 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.251057 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.011844 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.470253 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.823529 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.116757 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.87796 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.033597 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.96178 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.944768 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.202156 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.657434 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.077621 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.366302 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 14.590704 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.182516 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.309221 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.394279 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.611992 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 43.992195 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 53.611038 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 39.64373 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11623, jg31955, jg32687 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14478 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2391, Sbi_jg34126 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2382 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012546 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78109, Sgl80615 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016841, gene:ENSEOMG00000039732 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0001770, CQ.Regalona.r1.9BG0020590 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30275530 |
| Apiaceae | Apium graveolens | 5 | Ag10G02042, Ag10G02043, Ag10G02044, Ag10G02045, Ag4G01465 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G016520, scaffold004131G000030 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103718010, gene-LOC103720025, gene-LOC120109818 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.642.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G11511, Ftri15G15672 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G26060.1, AT4G32990.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002028m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g05920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g024580.2N, BniB07g008040.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0668 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0764 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g00470 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0060s00023.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g11070 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2065 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037624 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G09702, Lb2G09703, Lb5G28991, Lb5G28992 |
| Poaceae | Echinochloa crus-galli | 4 | AH03.724, BH03.857, CH03.2, CH03.954 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0561970, gene-QOZ80_7BG0595540 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0731700.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042018 |
| Poaceae | Oryza coarctata | 2 | Oco13G004560, Oco14G005360 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g14830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G112300 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr19G015590, Chr24G004550, Chr24G012880, Chr27G000550 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G751700, Tel7E01G751900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG061960, gene_TRIDC7BG055270 |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G446400.2, TraesCS7A02G446500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb304430_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-51868, nbis-gene-58360 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4981 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.241, evm.TU.LG06.1038, evm.TU.LG11.487 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g22260, gene.Posoc10g01020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.771 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17657 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13603 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17111 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.14 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012285 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15864 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8986 |
| Salicaceae | Populus euphratica | 2 | populus_peu02424, populus_peu02430 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132600334, gene-LOC132629872, gene-LOC132633644 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI004661900, SOLCI007330400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107030781, gene-LOC107031510 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12315 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0827 |
| Zosteraceae | Zostera marina | 1 | Zosma04g24200.v3.1 |