halophFGD

Basic Information

Locus ID: Ag10G02002

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: UPL7

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	210800168	210819858	-	Ag10G02002

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.22	212,837.88 Da	43.44	88.61	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00078	HECTc	1519	1885	1.13881E-138	IPR000569
Pfam	PF02140	Galactose binding lectin domain	637	703	1.9E-10	IPR000922
Pfam	PF01301	Glycosyl hydrolases family 35	55	151	7.3E-21	IPR031330
Pfam	PF00632	HECT-domain (ubiquitin-transferase)	1574	1887	8.9E-91	IPR000569
Pfam	PF17834	Beta-sandwich domain in beta galactosidase	213	284	3.6E-17	IPR041392
Pfam	PF01301	Glycosyl hydrolases family 35	158	202	3.0E-13	IPR031330
SUPERFAMILY	SSF51445	(Trans)glycosidases	43	206	1.4E-32	IPR017853
SUPERFAMILY	SSF56204	Hect, E3 ligase catalytic domain	1515	1879	1.06E-105	IPR035983
SUPERFAMILY	SSF49785	Galactose-binding domain-like	452	608	2.13E-21	IPR008979
SUPERFAMILY	SSF49785	Galactose-binding domain-like	269	444	6.8E-9	IPR008979
Gene3D	G3DSA:2.60.120.740	-	599	706	3.9E-7	IPR043159
Gene3D	G3DSA:3.20.20.80	Glycosidases	39	155	6.6E-25	-
Gene3D	G3DSA:3.30.2160.10	Hect, E3 ligase catalytic domain	1645	1724	2.7E-73	-
Gene3D	G3DSA:3.30.2410.10	Hect, E3 ligase catalytic domain	1762	1886	3.2E-37	-
Gene3D	G3DSA:3.90.1750.10	Hect, E3 ligase catalytic domains	1521	1759	2.7E-73	-
Gene3D	G3DSA:2.60.120.260	-	469	598	1.6E-11	-
Gene3D	G3DSA:3.20.20.80	Glycosidases	156	206	1.8E-12	-
Gene3D	G3DSA:2.60.120.260	-	207	444	1.3E-7	-
SMART	SM00119	hect_3	1537	1887	2.3E-120	IPR000569
ProSiteProfiles	PS50237	HECT domain profile.	1543	1887	85.461227	IPR000569
ProSiteProfiles	PS50228	SUEL-type lectin domain profile.	603	697	11.135243	IPR000922
ProSitePatterns	PS01182	Glycosyl hydrolases family 35 putative active site.	101	113	-	IPR019801
PRINTS	PR00742	Glycosyl hydrolase family 35 signature	482	496	5.9E-18	IPR001944
PRINTS	PR00742	Glycosyl hydrolase family 35 signature	42	61	5.9E-18	IPR001944
PRINTS	PR00742	Glycosyl hydrolase family 35 signature	509	525	5.9E-18	IPR001944
PRINTS	PR00742	Glycosyl hydrolase family 35 signature	99	114	5.9E-18	IPR001944
MobiDBLite	mobidb-lite	consensus disorder prediction	1264	1283	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1264	1292	-	-

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds) GO:0004842 (ubiquitin-protein transferase activity) GO:0030246 (carbohydrate binding)

KEGG Pathway

KO Term:

K10588 (ubiquitin-protein ligase E3 B [EC:2.3.2.26])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G53090.1	ubiquitin-protein ligase 7. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.
RefSeq	XP_017258322.1	PREDICTED: E3 ubiquitin-protein ligase UPL7 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9SCQ2	E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana OX=3702 GN=UPL7 PE=2 SV=1
TrEMBL	A0A164WJ59	Beta-galactosidase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020792 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	5.562921	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	3.539282	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	3.240118	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	3.44706	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	3.054317	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	3.948905	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	3.970114	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	3.696969	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	6.762023	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	5.977729	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	6.562584	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	6.473392	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	15.97176	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	11.503926	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	4.061333	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	4.776759	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	4.381138	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	6.591955	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	5.909698	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	5.188303	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	7.163811	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	6.40752	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	7.088817	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	5.800281	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	6.475566	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	7.73217	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	6.557981	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	7.492655	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	7.42271	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.610422		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.195733		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.900844		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	3.490877		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.281257		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	3.565852		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	2.363057		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.133599		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.396858		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	4.113655	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	4.165479	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.72411	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	5.165139	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	6.165639	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	11.323681	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	9.225364	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	4.001698	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	9.40132	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	6.74273	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	4.818284	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	4.302528	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg31990
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14385, gene_14386
Amaranthaceae	Atriplex hortensis	1	Ah030776
Amaranthaceae	Beta vulgaris	1	BVRB_7g160980
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg27271, Sbi_jg27272, Sbi_jg33259, Sbi_jg33260
Amaranthaceae	Salicornia europaea	1	Seu_jg7970
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00005674
Amaranthaceae	Suaeda glauca	2	Sgl71343, Sgl74938
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000006670, gene:ENSEOMG00000035810 ... gene:ENSEOMG00000039044, gene:ENSEOMG00000039478
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.7AG0019170, CQ.Regalona.r1.7BG0021780
Anacardiaceae	Pistacia vera	1	pistato.v30274330
Apiaceae	Apium graveolens	1	Ag10G02002
Arecaceae	Cocos nucifera	1	scaffold117190G000010
Arecaceae	Phoenix dactylifera	1	gene-LOC103710182
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.1640.V1.1
Asteraceae	Flaveria trinervia	1	Ftri16G01060
Brassicaceae	Arabidopsis thaliana	1	AT3G53090.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10010078m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g09230.v2.2
Brassicaceae	Brassica nigra	1	BniB06g066170.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G1527
Casuarinaceae	Casuarina glauca	1	Cgl02G1580
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno09g05410
Dunaliellaceae	Dunaliella salina	2	Dusal.0046s00002.v1.0, Dusal.0087s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g05780
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.2171
Plantaginaceae	Plantago ovata	2	Pov_00000154, Pov_00004967
Poaceae	Echinochloa crus-galli	3	AH01.1022, BH01.1161, CH01.1218
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_3AG0221390, gene-QOZ80_3BG0266530
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.4HG0334560.1
Poaceae	Lolium multiflorum	1	gene-QYE76_063009
Poaceae	Oryza coarctata	2	Oco05G020340, Oco06G021080
Poaceae	Oryza sativa	2	LOC_Os03g47949.1, LOC_Os03g47960.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G115200, gene-BS78_01G123400
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0104667
Poaceae	Sporobolus alterniflorus	2	Chr01G008200, Chr12G029110
Poaceae	Thinopyrum elongatum	2	Tel4E01G053200, Tel4E01G053300
Poaceae	Triticum dicoccoides	2	gene_TRIDC4AG044190, gene_TRIDC4BG004610
Poaceae	Triticum aestivum	3	TraesCS4A02G285800.2, TraesCS4B02G027200.1 ... TraesCS4D02G025000.2
Poaceae	Zea mays	1	Zm00001eb217270_P001
Poaceae	Zoysia japonica	1	nbis-gene-15768
Poaceae	Zoysia macrostachya	1	Zma_g3057
Portulacaceae	Portulaca oleracea	2	evm.TU.LG03.1909, evm.TU.LG14.209
Posidoniaceae	Posidonia oceanica	1	gene.Posoc04g11660
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_2_RagTag.947
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-4260
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-15982
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-10052
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000009l.922
Rhizophoraceae	Kandelia obovata	1	Maker00005793
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-12589
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-5794
Salicaceae	Populus euphratica	2	populus_peu09043, populus_peu25725
Solanaceae	Lycium barbarum	3	gene-LOC132629761, gene-LOC132629938, gene-LOC132629951
Solanaceae	Solanum chilense	1	SOLCI005628600
Solanaceae	Solanum pennellii	1	gene-LOC107031605
Tamaricaceae	Reaumuria soongarica	1	gene_4397
Tamaricaceae	Tamarix chinensis	1	TC02G2680