halophFGD

Basic Information

Locus ID: Ag10G01950

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Serine threonine-protein kinase-like protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	208145494	208148084	-	Ag10G01950

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.94	83,643.34 Da	41.07	88.43	0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	513	661	1.4E-31	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	486	759	1.29E-66	IPR011009
SUPERFAMILY	SSF50985	RCC1/BLIP-II	175	323	1.15E-15	IPR009091
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	669	767	6.7E-16	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	484	590	1.4E-29	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	591	668	4.3E-23	-
Gene3D	G3DSA:2.130.10.30	-	27	170	7.4E-7	IPR009091
Gene3D	G3DSA:2.130.10.30	-	214	348	6.8E-9	IPR009091
SMART	SM00220	serkin_6	513	763	1.2E-14	IPR000719
ProSiteProfiles	PS50050	TNFR/NGFR family cysteine-rich region domain profile.	343	398	9.402	IPR001368
ProSiteProfiles	PS50011	Protein kinase domain profile.	513	762	29.205803	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	519	541	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	634	646	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G09780.1	CRINKLY4 related 1.
RefSeq	XP_017255852.1	PREDICTED: serine/threonine-protein kinase-like protein CCR1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9S7D9	Serine/threonine-protein kinase-like protein CCR1 OS=Arabidopsis thaliana OX=3702 GN=CCR1 PE=1 SV=1
TrEMBL	A0A164WHR0	Serine/threonine-protein kinase-like protein CCR1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020837 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.655955	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.915811	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.817411	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.729519	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.05998	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.295272	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.275815	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.405155	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	7.739999	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	7.767015	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	9.186328	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	6.04272	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	5.866282	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	5.916726	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	3.022112	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	4.646339	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	2.673029	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	5.552049	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	8.11402	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	2.285879	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.127691	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.102947	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.699679	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.805057	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.074875	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	6.005047	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	9.207844	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	4.422156	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	6.513652	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.687675		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.526514		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.706138		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.750359		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.864005		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.950386		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.026524		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.458484		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.705229		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.761616	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.639362	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.782669	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.773763	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	2.711559	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	2.751709	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.645487	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.780576	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.419986	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	3.750253	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	3.332564	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	2.732914	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg14951
Aizoaceae	Mesembryanthemum crystallinum	1	gene_14248
Amaranthaceae	Atriplex hortensis	1	Ah030362
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg2059, Sbi_jg34457
Amaranthaceae	Salicornia europaea	1	Seu_jg2712
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00005787
Amaranthaceae	Suaeda glauca	2	Sgl71216, Sgl74786
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000034139, gene:ENSEOMG00000042270
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.7AG0016560, CQ.Regalona.r1.7BG0018310
Anacardiaceae	Pistacia vera	1	pistato.v30272450
Apiaceae	Apium graveolens	2	Ag10G01950, Ag2G00698
Asteraceae	Flaveria trinervia	1	Ftri16G02069
Brassicaceae	Arabidopsis thaliana	2	AT2G39180.1, AT3G09780.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10016278m.g.v1.0, Thhalv10020117m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g08120.v2.2, Sp4g21510.v2.2
Brassicaceae	Brassica nigra	2	BniB01g055110.2N, BniB08g025170.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0626, Ceq08G1317
Casuarinaceae	Casuarina glauca	2	Cgl02G0639, Cgl08G1343
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1956
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.1421
Plantaginaceae	Plantago ovata	1	Pov_00005113
Plumbaginaceae	Limonium bicolor	1	Lb1G00821
Portulacaceae	Portulaca oleracea	2	evm.TU.LG04.1690, evm.TU.LG10.1180
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_1_RagTag.1564
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-5269, nbisL1-mrna-5365
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-21026
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-3899
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000016l.232
Rhizophoraceae	Kandelia obovata	1	Maker00017075
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-17137, nbisL1-mrna-19849
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-20663, nbisL1-mrna-332
Salicaceae	Populus euphratica	3	populus_peu20118, populus_peu25746, populus_peu25759
Solanaceae	Lycium barbarum	1	gene-LOC132630062
Solanaceae	Solanum chilense	1	SOLCI004669900
Solanaceae	Solanum pennellii	1	gene-LOC107031805
Tamaricaceae	Reaumuria soongarica	1	gene_7566
Tamaricaceae	Tamarix chinensis	1	TC07G0698