Basic Information
Locus ID:
Ag10G01943
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 207972359 | 207976018 | - | Ag10G01943 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 93,253.88 Da | 44.70 | 58.74 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 361 | 654 | 1.80345E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 441 | 456 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 611 | 632 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 514 | 538 | 0.028 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 461 | 498 | 4.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 364 | 396 | 8.4E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 360 | 639 | 5.9E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 188 | 421 | 6.4E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 428 | 671 | 7.2E-47 | IPR015943 |
| SMART | SM00320 | WD40_4 | 500 | 539 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 358 | 397 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 591 | 632 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 548 | 590 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 459 | 498 | 5.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 456 | 130.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 365 | 399 | 11.391954 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 365 | 406 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 611 | 632 | 9.773251 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 465 | 500 | 10.653776 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 465 | 507 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 442 | 465 | 10.642123 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 443 | 457 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 384 | 398 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 384 | 398 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 443 | 457 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 485 | 499 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 682 | 765 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 734 | 765 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 718 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 299 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017254981.1 | PREDICTED: WD repeat-containing protein 44-like [Daucus carota subsp. sativus] | 0 |
| Q9R037 | WD repeat-containing protein 44 OS=Rattus norvegicus OX=10116 GN=Wdr44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164WHF4 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020850 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.183948 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.161793 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.149304 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.275457 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.143391 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.178218 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.325472 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.617137 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.523231 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.515632 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.536921 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.418512 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.477749 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.210222 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.035925 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.243724 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.294144 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.190877 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.543728 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.213101 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.811052 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.391027 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.395341 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.465421 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.184809 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.33632 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.026595 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.098314 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.465824 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.034963 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.103147 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.027538 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.096648 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.076383 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.246369 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.955322 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.568081 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.234738 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology