Basic Information
Locus ID:
Ag10G01923
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 207393713 | 207405984 | - | Ag10G01923 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 102,614.40 Da | 35.19 | 91.29 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 602 | 869 | 1.8097E-89 | - |
| Pfam | PF00069 | Protein kinase domain | 599 | 864 | 1.3E-42 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 454 | 494 | 1.8E-6 | IPR001611 |
| Pfam | PF12819 | Malectin-like domain | 31 | 360 | 3.5E-76 | IPR024788 |
| SUPERFAMILY | SSF52058 | L domain-like | 398 | 510 | 4.56E-25 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 582 | 866 | 1.62E-72 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 571 | 671 | 6.1E-30 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 374 | 522 | 7.8E-31 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 672 | 880 | 6.3E-58 | - |
| SMART | SM00220 | serkin_6 | 596 | 873 | 3.3E-22 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 596 | 872 | 36.838165 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 483 | 504 | 7.126702 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 718 | 730 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 602 | 624 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37050.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017257822.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Daucus carota subsp. sativus] | 0 |
| C0LGI2 | Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana OX=3702 GN=At1g67720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164WGU7 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020871 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.966704 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.126839 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.046423 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.91006 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.291782 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.070995 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.951836 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.919195 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 49.203892 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 50.25687 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 60.436794 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 48.239456 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 47.231564 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 34.58527 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.713994 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.149746 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 22.523138 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 36.132954 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 32.192822 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 22.46644 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 25.55225 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 36.925579 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 49.334244 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 45.974102 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 40.607674 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 47.781418 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 41.488327 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 29.996374 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 48.761055 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.898298 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.860388 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.176975 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.805021 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.946569 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.086326 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.631812 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.253578 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.241106 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.892641 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.355767 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.975253 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.022838 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.711661 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 20.203772 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.148777 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.74301 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 26.098608 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 27.763184 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 26.44351 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 31.21817 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg14926, jg14927, jg3438, jg34561, jg9544 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14190, gene_18050 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013817, Ah030209 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g147660 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg27599, Sbi_jg32919, Sbi_jg42752, Sbi_jg42753 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11238, Seu_jg7703 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002557, GOSA_00012142 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35118, Sgl40497, Sgl71563, Sgl75139 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000003146, gene:ENSEOMG00000006876 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.6AG0003710, CQ.Regalona.r1.6BG0003730 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30227840, pistato.v30271900 |
| Apiaceae | Apium graveolens | 2 | Ag10G01923, Ag8G02252 |
| Arecaceae | Cocos nucifera | 3 | COCNU_04G002830, COCNU_04G014550, scaffold011903G000020 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702853, gene-LOC103708996, gene-LOC103711613 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.225.V1.1, AsparagusV1_09.204.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri12G17450, Ftri13G27942, Ftri17G31209 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G67720.1, AT2G37050.3 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10016198m.g.v1.0, Thhalv10018088m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g19360.v2.2, Sp5g22730.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g044970.2N, BniB06g007390.2N, BniB08g023470.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G1300, Ceq08G1277 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G1373, Cgl08G1305 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g15830 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g01840 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1376, evm.TU.LG03.690 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003248, Pov_00003307 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30675 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.4671, AH04.15, AH05.92, BH02.4739, BH04.23, CH04.21 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0048410, gene-QOZ80_1BG0098350 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0330950.1, HORVU.MOREX.r3.5HG0466820.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_000204, gene-QYE76_003817, gene-QYE76_007989 ... |
| Poaceae | Oryza coarctata | 10 | Oco01G031390, Oco02G032500, Oco04G023990 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os11g01200.1, LOC_Os12g01200.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G420800, gene-BS78_05G001700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102993, Pt_Chr0601055, Pt_Chr0705183 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr03G023980, Chr04G020660, Chr07G022530, Chr08G017460 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G730200, Tel3E01G914300, Tel5E01G270100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG076020, gene_TRIDC3BG087740 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G538300.1, TraesCS3B02G603800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb139660_P001, Zm00001eb194930_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28044 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12028, Zma_g18310 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG13.109, evm.TU.LG16.1034, evm.TU.LG20.1448 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g35900 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.60444.13, evm.TU.Scaffold_15_RagTag.825 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-23180, nbisL1-mrna-27013, nbisL1-mrna-27200 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-17451, nbisL1-mrna-19218, nbisL1-mrna-9292 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-14688, nbisL1-mrna-15577, nbisL1-mrna-3874 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000001l.453, evm.TU.utg000013l.109 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00002580, Maker00006407, Maker00016558 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11206, nbisL1-mrna-5087, nbisL1-mrna-7019 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-15939, nbisL1-mrna-17696, nbisL1-mrna-489 |
| Salicaceae | Populus euphratica | 5 | populus_peu07667, populus_peu11741, populus_peu11749 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132630109, gene-LOC132641213 |
| Solanaceae | Solanum chilense | 2 | SOLCI005605700, SOLCI006905700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107020726, gene-LOC107031477 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_2732, gene_6772 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G1849, TC07G0633, TC11G0383 |
| Zosteraceae | Zostera marina | 2 | Zosma01g18710.v3.1, Zosma01g18720.v3.1 |