Basic Information
Locus ID:
Ag10G01913
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein RTF2 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 207246852 | 207248433 | + | Ag10G01913 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 41,550.22 Da | 35.34 | 79.95 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16653 | RING-like_Rtf2 | 190 | 235 | 6.81554E-23 | IPR027799 |
| Pfam | PF04641 | Rtf2 RING-finger | 86 | 357 | 4.8E-68 | - |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 25 | 92 | 6.11E-6 | IPR029071 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 10 | 86 | 9.025113 | IPR000626 |
| Coils | Coil | Coil | 243 | 274 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58020.1 | 0 | |
| RefSeq | XP_017254624.1 | PREDICTED: protein RTF2 homolog [Daucus carota subsp. sativus] | 0 |
| Q3T1J8 | Replication termination factor 2 OS=Rattus norvegicus OX=10116 GN=Rtf2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161ZUU5 | Replication termination factor 2 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020883 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 33.231514 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 33.306461 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 35.375034 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 40.567165 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 40.071747 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 43.554226 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 39.470924 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 30.830006 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 50.020676 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 49.953472 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.129242 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 49.922264 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 46.693031 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 44.226688 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 29.233915 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 33.778545 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 28.701097 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 38.267925 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 37.280403 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 41.378223 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 45.06488 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 45.363155 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 43.143307 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 42.681141 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 42.949074 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 35.552715 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 32.064041 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 36.190891 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 38.17915 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 37.549458 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 40.086208 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 38.920013 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 103.606911 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 53.539848 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 116.41375 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 57.003441 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 46.545151 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 51.859482 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 24.915417 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 21.147987 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 18.125132 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 63.329891 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 66.246246 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 64.395004 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 61.616383 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 61.758835 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 66.669327 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 40.070343 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.049124 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.364861 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15576, jg3977 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10557 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018797 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g168240, BVRB_8g192400 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21954, Sbi_jg29600 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15793 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011121 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41825, Sgl46625 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000003248, gene:ENSEOMG00000031956 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0003720, CQ.Regalona.r1.3BG0003850 |
| Apiaceae | Apium graveolens | 1 | Ag10G01913 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005270 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710414, gene-LOC103714229 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1843.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G30969 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G58020.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013961m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g19700.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g037400.2N, BniB05g037610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2537 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g06330 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0002s00049.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g09420 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.254 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000876 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G27204, Lb5G27207 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.558, BH06.611, CH06.626 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0511360, gene-QOZ80_6BG0463350 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0658950.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028189, gene-QYE76_028233 |
| Poaceae | Oryza coarctata | 2 | Oco11G003870, Oco12G003860 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g08490.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G065900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G021460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G300100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG018060 |
| Poaceae | Triticum aestivum | 3 | TraesCS7B02G050900.1.cds1, TraesCS7B02G355600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb158280_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4995 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29236 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.2433, evm.TU.LG18.339, evm.TU.LG26.702 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g12650 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2192 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25288 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13188 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4945 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.475 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000210 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17480 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9199 |
| Salicaceae | Populus euphratica | 2 | populus_peu05611, populus_peu12248 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602990 |
| Solanaceae | Solanum chilense | 1 | SOLCI001358200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025857 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8158 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1651 |
| Zosteraceae | Zostera marina | 1 | Zosma03g06330.v3.1 |